Comparative electronic band structure study of the intrachain ferromagnetic versus antiferromagnetic coupling in the magnetic oxides Ca3Co2O6 and Ca3FeRhO6

In the (MM'O6)infinity chains of the transition-metal magnetic oxides Ca3MM'O6 the MO6 trigonal prisms alternate with the M'O6 octahedra by sharing their triangular faces. In the (Co(2O6)infinity chains of Ca3Co2O6 (M = M' = Co) the spins are coupled ferromagnetically, but in the (FeRhO6)infinity chains of Ca3FeRhO6 (M = Fe, M' = Rh) they are coupled antiferromagnetically. The origin of this difference was probed by carrying out spin-polarized density functional theory electronic band structure calculations for ordered spin states of Ca3Co2O6 and Ca3FeRhO6. The spin state of a (MM'O6)infinity chain determines the occurrence of direct metal-metal bonding between the adjacent trigonal prism and octahedral site transition-metal atoms. The extent of direct metal-metal bonding in the (Co2O6)infinity chains of Ca3Co2O6 is stronger in the intrachain ferromagnetic state than in the intrachain antiferromagnetic state, so that the intrachain ferromagnetic state becomes more stable than the intrachain antiferromagnetic state. Such a metal-metal-bonding-induced ferromagnetism is expected to occur in magnetic insulators and magnetic metals of transition-metal elements in which direct metal-metal bonding can be enhanced by ferromagnetic ordering. In the (FeRhO6)infinity chains of Ca3FeRhO6 the ferromagnetic coupling does not lead to a strong metal-metal bonding and the adjacent spins interact by the Fe-O...O-Fe super-superexchange, hence leading to an antiferromagnetic coupling.     

High-spin to low-spin relaxation kinetics in the [Fe(TRIM)2]Cl2 complex

A quasi-quantitative photo-induced low-spin (LS)-->high-spin (HS) conversion of FeII ions has been observed in the [Fe(TRIM)2]Cl2 complex by irradiating the sample with blue light (488 nm) at 10 K. The time dependence of the HS-->LS relaxation has been studied between 10 K and 44 K by means of magnetic susceptibility measurements. These relaxation curves could be satisfactorily fitted by mono-exponential decays including tunnelling effect except for temperatures below 30 K. The introduction of a distribution of vibrational frequencies into this model improved significantly the fits in the low-temperature range and gave a good agreement with the experimental data in the whole temperature range suggesting a multi-rate relaxation process in this complex.     

Limit of detection estimator for second-order bilinear calibration

A new approach is developed for estimating the limit of detection in second-order bilinear calibration with the generalized rank annihilation method (GRAM). The proposed estimator is based on recently derived expressions for prediction variance and bias. It follows the latest IUPAC recommendations in the sense that it concisely accounts for the probabilities of committing both types I and II errors, i.e. false positive and false negative declarations, respectively. The estimator has been extensively validated with simulated data, yielding promising results.     

Two New Antiferromagnetic Nickel(II) Complexes Bridged by Azido Ligands in the Cis Position. Effect of the Counteranion on the Crystal Structure and Magnetic Properties

Two new nickel(II) end-to-end azido-bridged compounds, cis-catena-[NiL(2)(&mgr;-N(3))](n)()(ClO(4))(n)().nH(2)O (1) and [Ni(2)L(4)(&mgr;-N(3))(2)](PF(6))(2) (2), were synthesized and characterized; L is 2-(aminoethyl)pyridine. The crystal structures of 1 and 2 were solved. Complex 1: monoclinic system, space group P2(1)/a, a = 8.637(2) ?, b = 18.9995(7) ?, c = 12.3093(7) ?, beta = 105.92(2) degrees, Z = 4. Complex 2: triclinic system, space group P&onemacr;, a = 9.139(7) ?, b = 10.124(3) ?, c = 12.024(2) ?, alpha = 70.407(14) degrees, beta = 84.19(2) degrees, gamma = 67.67(4) degrees, Z = 1. In the two complexes the nickel atom is situated in a similarly distorted octahedral environment. The two complexes are different; 1 is a one-dimensional helicoidal complex with the two L ligands and the two end-to-end azido bridges in a cis arrangement while complex 2 is a dinuclear system with two end-to-end azido bridges, indicating the extreme importance of the counteranion present (ClO(4)(-) for 1 and PF(6)(-) for 2). The magnetic properties of the two compounds were studied by susceptibility measurements vs temperature. The chi(M) vs T plot for 1 shows the shape for a weakly antiferromagnetically coupled nickel(II) one-dimensional complex without a maximum until 4 K. In contrast, for complex 2 the shape of the chi(M) vs T curve shows a maximum near 40 K, indicating medium antiferromagnetic coupling. From the spin Hamiltonian -J(ij)()S(i)()S(j)(), J values for 1 and 2 were less than -1 and -29.1 cm(-)(1), respectively. The magnetic behavior for 1 and 2 may be explained in terms of the overlap between magnetic orbitals, taking into account the torsion of the Ni(II) atoms and azido-bridging ligands in the two structures.     

Ferrocenoyl peptides with sulfur-containing side chains: synthesis, solid state and solution structures

The synthesis and full characterization of a number of amino acid and dipeptide derivatives with sulfur-containing side chains derived from ferrocene carboxylic acid and ferrocene-1,1′-dicarboxylic acid is presented. In particular, compounds Fc-CO-(Aaa)_n-OMe (4) and Fe[C₅H₄-CO-(Aaa)_n-OMe]₂ (3) with (Aaa)_n = Cys(Bzl) (a), Cys(Bzl)-Cys(Bzl) (b), Cys(p-OMe-Bzl) (c), Cys(p-OMe-Bzl)-Cys(p-OMe-Bzl) (d), Met (e), and Met-Met (f) were prepared. Also, the free acid derivatives Fe[C₅H₄-CO-Met-OH]₂ (6e) and Fc-CO-Met-OH (7e) were prepared and characterized. The solid state structures of 3a, 4b, and 4e were determined by single crystal X-ray diffraction. Compound 3a shows a 1,3′ substitution pattern on the Cp rings in the solid state. Structures in solution were determined by NMR, IR and CD spectroscopy, with particular emphasis on the question of hydrogen bonding and helical chirality of the metallocene. As an example, the full assignment for the Cp signals in the disubstituted derivative 3a was achieved by simulation of the ¹H NMR signals from the cyclopentadienyl ring in combination with 2D-NOESY spectra. In solution, 3a has the known 1,2′ substitution pattern, which is stabilized by intramolecular hydrogen bonds.     

Analysis of sorption and bioavailability of different species of mercury on model soil components using XAS techniques and sensor bacteria

The present work studies the adsorption behaviour of mercury species on different soil components (montmorillonite, kaolinite and humic acid) spiked with CH₃HgCl and CH₃HgOH at different pH values, by using XAS techniques and bacterial mercury sensors in order to evaluate the availability of methyl mercury on soil components. The study details and discusses different aspects of the adsorption process, including sample preparation (with analysis of adsorbed methyl mercury by ICP-OES), the various adsorption conditions, and the characterization of spiked samples by XAS techniques performed at two synchrotron facilities (ESRF in Grenoble, France and HASYLAB in Hamburg, Germany), as well as bioavailability studies using mercury-specific sensor bacteria. Results show that XAS is a valuable qualitative technique that can be used to identify the bonding character of the Hg in mercury environment. The amount of methyl in mercury adsorbed to montmorillonite was pH-dependent while for all soil components studied, the bond character was not affected by pH. On the other hand, clays exhibited more ionic bonding character than humic acids did with methyl mercury. This interaction has a higher covalent character and so it is more stable for CH₃HgOH than for CH₃HgCl, due to the higher reactivity of the hydroxyl group arising from the possible formation of hydrogen bonds.The bioavailability of methyl mercury adsorbed to montmorillonite, kaolinite and humic acids was measured using recombinant luminescent sensor bacterium Escherichia coli MC1061 (pmerBR_BSluc). In case of contact exposure (suspension assays), the results showed that the bioavailability was higher than it was for exposure to particle-free extracts prepared from these suspensions. The highest bioavailability of methyl mercury was found in suspensions of montmorillonite (about 50% of the total amount), while the bioavailabilities of kaolinite and humic acids were five times lower (about 10%). The behaviour of methyl mercury in the presence of montmorillonite could be explained by the more ionic bonding character of this system, in contrast to the more covalent bonding character observed for humic acids. Thus, XAS techniques seem to provide promising tools for investigating the mechanisms behind the observed bioavailabilities of metals in various environmental matrices, an important topic in environmental toxicology.     

Factor Xa: Simulation studies with an eye to inhibitor design

Factor Xa is a serine protease which activates thrombin and plays a key regulatory role in the blood-coagulation cascade. Factor Xa is at the crossroads of the extrinsic and intrinsic pathways of coagulation and, hence, has become an important target for the design of anti-thrombotics (inhibitors). It is not known to be involved in other processes than hemostasis and its binding site is different to that of other serine proteases, thus facilitating selective inhibition. The design of high-affinity selective inhibitors of factor Xa requires knowledge of the structural and dynamical characteristics of its active site. The three-dimensional structure of factor Xa was resolved by X-ray crystallography and refined at 2.2 Å resolution by Padmanabhan and collaborators. In this article we present results from molecular dynamics simulations of the catalytic domain of factor Xa in aqueous solution. The simulations were performed to characterise the mobility and flexibility of the residues delimiting the unoccupied binding site of the enzyme, and to determine hydrogen bonding propensities (with protein and with solvent atoms) of those residues in the active site that could interact with a substrate or a potential inhibitor. The simulation data is aimed at facilitating the design of high-affinity selective inhibitors of factor Xa.     

Factors affecting the electrochemical and spectroelectrochemical properties of diruthenium(III,II) complexes containing four identical unsymmetrical bridging ligands

Factors affecting the electrochemical and spectroelectrochemical properties of diruthenium(III,II) complexes containing four unsymmetrical bridging ligands are reported for seven related compounds which were isolated in one or two of the four possible isomeric forms. The investigated compounds are represented as Ru(2)(2-CH(3)ap)(4)Cl, Ru(2)(2,5-F(2)ap)(4)Cl, Ru(2)(2,6-F(2)ap)(4)Cl, and Ru(2)(2,4,6-F(3)ap)(4)Cl where 2-CH(3)ap, 2,5-F(2)ap, 2,6-F(2)ap, and 2,4,6-F(3)ap are, respectively, the 2-(2-methylanilino)pyridinate anion, the 2-(2,5-difluoroanilino)pyridinate anion, the 2-(2,6-difluoroanilino)pyridinate anion, and the 2-(2,4,6-trifluoroanilino)pyridinate anion. Ru(2)(2-CH(3)ap)(4)Cl and Ru(2)(2,5-F(2)ap)(4)Cl exist only in a (4,0) conformation while Ru(2)(2,4,6-F(3)ap)(4)Cl is present in both (3,1) and (4,0) isomeric forms. Ru(2)(2,6-F(2)ap)(4)Cl also exists in two isomeric forms, but only the (3,1) isomer was generated in sufficient quantities to be isolated and structurally characterized. This series of seven closely related metal-metal bonded complexes thus provides the first possibility to systematically examine how differences in position and number of the electron-donating or electron-withdrawing groups on the anionic bridging ligands might be related to the electronic properties and structural features of the compound as well as the type and number of geometric isomers which are formed. Each diruthenium derivative undergoes three one-electron transfers in CH(2)Cl(2) containing 0.1 M tetra-n-butylammonium perchlorate (TBAP). The first reduction and first oxidation products were characterized by thin-layer UV-vis spectroelectrochemistry, and the spectroscopic data, along with E(1/2) values, were then related via linear free energy relationships to the type of isomer and/or position of the electron-donating or electron-withdrawing substituents on the anionic ap bridge. The electrogenerated Ru(2)(6+) and Ru(2)(4+) forms of the compounds were assigned on the basis of electrochemical and UV-vis spectroscopic data as having the electronic configuration sigma(2)pi(4)delta(2)pi(2) and sigma(2)pi(4)delta(2)pi(3)delta, respectively, and seemed to be independent of the isomer type ((3,1) or (4,0)). The spectral and electrochemical properties of the compounds both vary substantially as a function of the isomer type, but this is not reflected in the structural features of the compounds which are within the range of what is seen for other Ru(2)(5+) species described in the literature. The Ru-Ru bond lengths of the four structurally characterized (4,0) isomers of the ap complexes range from 2.275 to 2.296 A while those of the three structurally characterized (3,1) isomers of ap derivatives fall in the range 2.284-2.286 A and show no significant difference among the three compounds. The Ru-Cl bond lengths of the (3,1) isomers do not vary significantly with the bridging ligand and range from 2.458 to 2.471 A whereas those of the (4,0) isomers range from 2.437 to 2.487 A and show larger variations among the compounds. The Ru-Ru-Cl bond angle is virtually independent of the bridging ligand in the case of the (4,0) isomers but decreases with the electron-withdrawing effect of the substituent in the case of the (3,1) isomers.     

The effect of amino acid deletions and substitutions in the longest loop of GFP

Background  

The effect of single and multiple amino acid substitutions in the green fluorescent protein (GFP) from Aequorea victoria has been extensively explored, yielding several proteins of diverse spectral properties. However, the role of amino acid deletions in this protein -as with most proteins- is still unknown, due to the technical difficulties involved in generating combinatorial in-phase amino acid deletions on a target region.     

Biosynthesis of conjugatable saccharidic moieties of GM2 and GM3 gangliosides by engineered E. coli

Oligosaccharidic moieties of GM(2) and GM(3) gangliosides bearing an allyl or a propargyl aglycon, are efficiently biosynthesized on the gram scale by growing metabolically engineered Escherichia coli cells in the presence of the corresponding lactoside acceptors and sialic acid.