Tautomerization in gas-phase ion chemistry of isomeric C-8 deoxyguanosine adducts from phenol-induced DNA damage

Collision-induced dissociation (CID) of 8-(4'-hydroxyphenyl)-2'-deoxyguanosine and 8-(2'-hydroxyphenyl)-2'-deoxyguanosine was investigated using sequential tandem mass spectrometry. These adducts represent biomarkers of DNA damage linked to phenolic radicals and were investigated to gain insight into the effects of chemical structure of a C-8 modification on fragmentation pathways of modified 2'-deoxyguanosine (dG). CID in MS(2) of the deprotonated molecules of both the isomers generated the same product ion having the same m/z values. CID in MS(3) of the product ion at m/z 242 and CID in MS(4) experiments carried out on the selected product ions at m/z 225 and m/z 218 afford distinct fragmentation patterns. The conformational properties of isomeric product ions from CID showed that the ortho-isomers possess the unique ability to tautomerize through an intramolecular proton transfer between the phenolic OH group and the imine nitrogen (N7). Tautomerization of ortho-isomers to their keto-tautomers led to differences in their system of conjugated double bonds compared with either their enol-tautomer or the para-isomer. The charge redistribution through the N-7 site on the imidazole ring is a critical step in guanosine adduct fragmentation which is disrupted by the formation of the keto-tautomer. For this reason, different reaction pathways are observed for 8-(4'-hydroxyphenyl)-2'-deoxyguanosine and 8-(2'-hydroxyphenyl)-2'-deoxyguanosine. We present herein the dissociation and the gas-phase ion-molecule reactions for highly conjugated ions involved in the CID ion chemistry of the investigated adducts. These will be useful for those using tandem mass spectrometry for structural elucidation of C-8 modified dG adducts. This study demonstrates that the modification at the C-8 site of dG has the potential to significantly alter the reactivity of adducts. We also show the ability of tandem mass spectrometry to completely differentiate between the isomeric dG adducts investigated.     

Na[Li(NH2BH3)2]--the first mixed-cation amidoborane with unusual crystal structure

We describe the successful synthesis of the first mixed-cation (pseudoternary) amidoborane, Na[Li(NH(2)BH(3))(2)], with theoretical hydrogen capacity of 11.1 wt%. Na[Li(NH(2)BH(3))(2)] crystallizes triclinic (P1) with a = 5.0197(4) ?, b = 7.1203(7) ?, c = 8.9198(9) ?, α = 103.003(6)°, β = 102.200(5)°, γ = 103.575(5)°, and V = 289.98(5) ?(3) (Z = 2), as additionally confirmed by Density Functional Theory calculations. Its crystal structure is topologically different from those of its orthorhombic LiNH(2)BH(3) and NaNH(2)BH(3) constituents, with distinctly different coordination spheres of Li (3 N atoms and 1 hydride anion) and Na (6 hydride anions). Na[Li(NH(2)BH(3))(2)], which may be viewed as a product of a Lewis acid (LiNH(2)BH(3))/Lewis base (NaNH(2)BH(3)) reaction, is an important candidate for a novel lightweight hydrogen storage material. The title material decomposes at low temperature (with onset at 75 °C, 6.0% mass loss up to 110 °C, and an additional 3.0% up to 200 °C) while evolving hydrogen contaminated with ammonia.     

The -Cys-Cys- motif in Helicobacter pylori's Hpn and HspA proteins is an essential anchoring site for metal ions

The Hpn and HspA proteins from H. pylori are significant for nickel homeostasis and protect the cells from higher concentrations of external metal ions. Both proteins have a unique histidine- and cysteine-rich domain at the C terminus. The interactions of Ni(2+), Bi(3+), Zn(2+) and Cd(2+) ions with C-terminal Ac-CCSTSDSHHQ-NH(2) and Ac-EEGCCHGHHE-NH(2) fragments from Hpn and the Ac-GSCCHTGNHD-NH(2) sequence from HspA were studied by potentiometry, mass spectrometry, circular dichroism and UV-Vis spectroscopy. Ac-CC-NH(2) was used as a reference peptide. The studies have shown that nickel ions form planar complexes with a {2S(-),N(-)} binding mode. The thiol sulfurs of the -Cys-Cys- motif are also the anchoring sites for Bi(3+), Zn(2+) and Cd(2+) ions. The studied protein fragments have the highest affinity for Bi(3+) ions. The thermodynamic stability of Ni(2+) is much higher then that of Zn(2+).     

Nonstationary Stokes system in weighted Sobolev spaces

We consider an initial‐boundary value problem for nonstationary Stokes system in a bounded domain Omega??³ with slip boundary conditions. We assume that Ω is crossed by an axis L. Let us introduce the following weighted Sobolev spaces with finite norms: and where ?(x) = dist{x, L}. We proved the result. Given the external force f∈L_{2, ?µ}(Ω^T), initial velocity v₀∈H(Ω), µ∈?₊\? there exist velocity v∈H(Ω^T) and the pressure p, ?p∈L_{2, ?µ}(Ω^T) and a constant c, independent of v, p, f, such that As we consider the Stokes system in weighted Sobolev spaces the following two things must be used:

• 1. the slip boundary condition and
• 2. the Helmholtz–Weyl decomposition.

Copyright © 2010 John Wiley & Sons, Ltd.     

The Helmholtz–Weyl decomposition in weighted Sobolev spaces

Let f∈L_{2, ? µ}(?³), where where x = (x₁, x₂, x₃) is the Cartesian system in ?³, x′ = (x₁, x₂), , µ∈?₊\?. We prove the decomposition f = ? ?u + g, with g divergence free and u is a solution to the problem in ?³ Given f∈L_{2, ? µ}(?³) we show the existence of u∈H(?³) such that where Since f, u, g are defined in ?³ we need a sufficiently fast decay of these functions as |x|→∞. Copyright © 2010 John Wiley & Sons, Ltd.     

A multifaceted approach to hydrogen storage

The widespread adoption of hydrogen as an energy carrier could bring significant benefits, but only if a number of currently intractable problems can be overcome. Not the least of these is the problem of storage, particularly when aimed at use onboard light-vehicles. The aim of this overview is to look in depth at a number of areas linked by the recently concluded HYDROGEN research network, representing an intentionally multi-faceted selection with the goal of advancing the field on a number of fronts simultaneously. For the general reader we provide a concise outline of the main approaches to storing hydrogen before moving on to detailed reviews of recent research in the solid chemical storage of hydrogen, and so provide an entry point for the interested reader on these diverse topics. The subjects covered include: the mechanisms of Ti catalysis in alanates; the kinetics of the borohydrides and the resulting limitations; novel transition metal catalysts for use with complex hydrides; less common borohydrides; protic-hydridic stores; metal ammines and novel approaches to nano-confined metal hydrides.     

Scanning electrochemical microscopy in the 21st century. Update 1: Five years after

This Perspective is an update to our more extensive survey of scanning electrochemical microscopy (SECM) published in 2007. During this time, the SECM field retained its momentum by expanding into new areas and meeting the emerging scientific and technological challenges. Here we focus on most prominent developments such as high-resolution imaging, investigation of structures and processes on the nanoscale, alternative energy applications, and new approaches to solving "real world" problems. The fabrication of novel SECM probes and related theoretical advances are also discussed.     

Phase transition induced improvement in H2 desorption kinetics: the case of the high-temperature form of Y(BH4)3

The high-temperature (HT) phase of Y(BH(4))(3) has been prepared by heating of the as mechanochemically synthesised low-temperature (LT) phase of Y(BH(4))(3) to 194-216 °C and subsequent rapid cooling to ambient temperature. Although the differences in the crystal structure and vibrational spectra for these closely-related polymorphs are rather small, yet the NMR MAS (1)H and CP MAS (89)Y spectra reveal clear differences in the chemical shifts for both nuclei. The thermal decomposition process of both forms differs noticeably below 260 °C, decomposition being faster and more facile for the HT phase. The activation energy for thermal decomposition, calculated according to the Kissinger equation, is nearly three times lower for the HT than for the LT polymorph for the first step of the thermal decomposition signalling giant improvement of kinetics of H(2) desorption.     

Molecular clusters in aqueous solutions of pyridine and its methyl derivatives

Small-angle neutron scattering proved that molecules in aqueous solutions of pyridine, 2-methylpyridine and 2,6-dimethylpyridine form clusters. The clusters are dynamic aggregates consisting of hydrogen-bonded water-amine complexes. Strengthening of the hydrogen bonds between water and amine molecules due to the methyl groups in the ortho position in the pyridine ring makes the structures more stable, as was evidenced by relatively long times of the structural relaxation. The strong intermolecular forces affect the thermal expansion of the systems. No aggregates similar to those in aqueous systems are present in the methanolic ones. That points to the crucial role of water in the molecular clustering. A molecule of methanol, although capable of hydrogen bonding with the amines, cannot participate in larger structures because of the lack of protons that could form the enhanced network. Thus, even if the amine-methanol complexes occur, they are incapable of further association. It was shown that the co-operative nature of hydrogen bonds and the propensity of water to association are the main factors that determine the properties of aqueous systems.