Dinucleoside (5′ → 3′)-O,S-Phosphorodithioates - New Class of Dinucleotide Analogues

Abstract

Nucleoside 3′-0- and 5′-O-phosphorodithioates have been recently described by Caruthers et al.¹ as a new type of nucleotide analogues. These compounds have also been obtained in our Laboratory by one-pot dithiaphospholane approach.² We now report on the transformation of some of these derivatives into new class of dinucleotide analogues. We have found that nucleoside 3′-O-phosphorodithioates (1) react in DMF solution with 5′-bromo-5′-deoxythymidine to give in high yield corresponding dinucleoside (5′→3′)-O,S-phosphorodithioates (2) - first examples of a new class of dinucleotide analogues possessing the internucleotide phosphorothioate linkage with one of the sulfur atoms in a 3′-bridging position.     

15N NMR Study of the P-N Bonding in Phosphoric Amides

Abstract

A series of phosphoric amidodiesters, diamidoesters and triamides was prepared and their ³¹P and¹⁵ N NMR spectra were recorded in order to evaluate the major structural factors that determine the chemical shifts and coupling contants values. Considering the equation expressing the structural effects on shielding^[1].     

Strategy of Cr detoxification by Callitriche cophocarpa

The present work focused on the qualitative and quantitative analysis of Cr detoxification strategy of aquatic cosmopolitan plant Callitriche cophocarpa. This plant species has just been described in the context of its unusual accumulation potential of Cr. The emphasis of the work was placed on the redox reaction Cr(VI)→Cr(III) which is considered to be remediation mechanism of highly reactive and mobile Cr(VI) ions. Plants were immersed for 5 days in 1 mM of Cr(VI) (potassium dichromate) or 1 mM of Cr(III) (chromium sulphate) solutions in semi-natural conditions. Cr was effectively removed from the solution up to the extent of ca.58% or 35% of the starting amount, in the case of Cr(III) and Cr(VI), respectively. No plant-induced Cr(VI) reduction accompanying Cr accumulation was observed in Cr(VI) solutions except from the apparent one, noticed at the fourth day of incubation. On the contrary to these results, according to the method of electron paramagnetic resonance spectroscopy (L-band EPR), biphasic signal of Cr(V) attending Cr(VI) to Cr(III) reduction was detected inside the plant tissue every day of investigations. Our results show that phytoextraction but not phytostabilization is the main strategy of Cr detoxification by C. cophocarpa in aquatic systems.      

Performance of density functional theory in computing nonresonant vibrational (hyper)polarizabilities

A set of exchange‐correlation functionals, including BLYP, PBE0, B3LYP, BHandHLYP, CAM‐B3LYP, LC‐BLYP, and HSE, has been used to determine static and dynamic nonresonant (nuclear relaxation) vibrational (hyper)polarizabilities for a series of all‐trans polymethineimine (PMI) oligomers containing up to eight monomer units. These functionals are assessed against reference values obtained using the Møller–Plesset second‐order perturbation theory (MP2) and CCSD methods. For the smallest oligomer, CCSD(T) calculations confirm the choice of MP2 and CCSD as appropriate for assessing the density functionals. By and large, CAM‐B3LYP is the most successful, because it is best for the nuclear relaxation contribution to the static linear polarizability, intensity‐dependent refractive index second hyperpolarizability, static second hyperpolarizability, and is close to the best for the electro‐optical Pockels effect first hyperpolarizability. However, none of the functionals perform satisfactorily for all the vibrational (hyper)polarizabilities studied. In fact, in the case of electric field‐induced second harmonic generation all of them, as well as the Hartree–Fock approximation, yield the wrong sign. We have also found that the Pople 6–31+G(d) basis set is unreliable for computing nuclear relaxation (hyper)polarizabilities of PMI oligomers due to the spurious prediction of a nonplanar equilibrium geometry. © 2013 Wiley Periodicals, Inc.     

First,Highly Stereoselective Synthesis of Neotrehalosamines

ABSTRACT

Among the known non-symmetrical naturally occurring aminotrehaloses possessing antimicrobial activity, the stereoselective synthesis of α, α-linked D-glucosaminyl-D-glucoside as well as of D-glucosaminyl-D-mannoside has been reported.¹ In contrast, the synthesis of the α, β-isomer composed of two 2-amino sugar units occurring in tunicamycin antibiotics 1 has not been studied to the same extent and is not readily obtainable in pure form.     

Pressure‐Induced Intersite Bi?M (M=Ru, Ir) Valence Transitions in Hexagonal Perovskites

Pressure‐induced charge transfer from Bi to Ir/Ru is observed in the hexagonal perovskites Ba_3+nBiM_2+nO_9+3n (n=0,1; M=Ir,Ru). These compounds show first‐order, circa 1 % volume contractions at room temperature above 5 GPa, which are due to the large reduction in the effective ionic radius of Bi when the 6s shell is emptied on oxidation, compared to the relatively negligible effect of reduction on the radii of Ir or Ru. They are the first such transitions involving 4d and 5d compounds, and they double the total number of cases known. Ab initio calculations suggest that magnetic interactions through very short (ca. 2.6 Å) M M bonds contribute to the finely balanced nature of their electronic states.     

Sulfanyl Porphyrazines with Morpholinylethyl Periphery—Synthesis,Electrochemistry, and Photocatalytic Studies after Deposition on Titanium(IV) Oxide P25 Nanoparticles

The syntheses, spectral UV–Vis, NMR, and electrochemical as well as photocatalytic properties of novel magnesium(II) and zinc(II) symmetrical sulfanyl porphyrazines with 2-(morpholin-4-yl)ethylsulfanyl peripheral substituents are presented. Both porphyrazine derivatives were synthesized in cyclotetramerization reactions and subsequently embedded on the surface of commercially available P25 titanium(IV) oxide nanoparticles. The obtained macrocyclic compounds were broadly characterized by ESI MS spectrometry, 1D and 2D NMR techniques, UV–Vis spectroscopy, and subjected to electrochemical studies. Both hybrid materials, consisting of porphyrazine derivatives embedded on the titanium(IV) oxide nanoparticles’ surface, were characterized in terms of particle size and distribution. Next, they were subjected to photocatalytic studies with 1,3-diphenylisobenzofuran, a known singlet oxygen quencher. The applicability of the obtained hybrid material consisting of titanium(IV) oxide P25 nanoparticles and magnesium(II) porphyrazine derivative was assessed in photocatalytic studies with selected active pharmaceutical ingredients, such as diclofenac sodium salt and ibuprofen.     

Fundamental Characterization,Photophysics and Photocatalysis of a Base Metal Iron(II)-Cobalt(III) Dyad

A new base metal iron-cobalt dyad has been obtained by connection between a heteroleptic tetra-NHC iron(II) photosensitizer combining a 2,6-bis[3-(2,6-diisopropylphenyl)imidazol-2-ylidene]pyridine with 2,6-bis(3-methyl-imidazol-2-ylidene)-4,4′-bipyridine ligand, and a cobaloxime catalyst. This novel iron(II)-cobalt(III) assembly has been extensively characterized by ground- and excited-state methods like X-ray crystallography, X-ray absorption spectroscopy, (spectro-)electrochemistry, and steady-state and time-resolved optical absorption spectroscopy, with a particular focus on the stability of the molecular assembly in solution and determination of the excited-state landscape. NMR and UV/Vis spectroscopy reveal dissociation of the dyad in acetonitrile at concentrations below 1 mM and high photostability. Transient absorption spectroscopy after excitation into the metal-to-ligand charge transfer absorption band suggests a relaxation cascade originating from hot singlet and triplet MLCT states, leading to the population of the ³MLCT state that exhibits the longest lifetime. Finally, decay into the ground state involves a ³MC state. Attachment of cobaloxime to the iron photosensitizer increases the ³MLCT lifetime at the iron centre. Together with the directing effect of the linker, this potentially makes the dyad more active in photocatalytic proton reduction experiments than the analogous two-component system, consisting of the iron photosensitizer and Co(dmgH)₂(py)Cl. This work thus sheds new light on the functionality of base metal dyads, which are important for more efficient and sustainable future proton reduction systems.     

Incorporation of β-Alanine in Cu(II) ATCUN Peptide Complexes Increases ROS Levels,DNA Cleavage and Antiproliferative Activity**

Redox-active Cu(II) complexes are able to form reactive oxygen species (ROS) in the presence of oxygen and reducing agents. Recently, Faller et al. reported that ROS generation by Cu(II) ATCUN complexes is not as high as assumed for decades. High complex stability results in silencing of the Cu(II)/Cu(I) redox cycle and therefore leads to low ROS generation. In this work, we demonstrate that an exchange of the α-amino acid Gly with the β-amino acid β-Ala at position 2 (Gly2→β-Ala2) of the ATCUN motif reinstates ROS production (^•OH and H₂O₂). Potentiometry, cyclic voltammetry, EPR spectroscopy and DFT simulations were utilized to explain the increased ROS generation of these β-Ala2-containing ATCUN complexes. We also observed enhanced oxidative cleavage activity towards plasmid DNA for β-Ala2 compared to the Gly2 complexes. Modifications with positively charged Lys residues increased the DNA affinity through electrostatic interactions as determined by UV/VIS, fluorescence, and CD spectroscopy, and consequently led to a further increase in nuclease activity. A similar trend was observed regarding the cytotoxic activity of the complexes against several human cancer cell lines where β-Ala2 peptide complexes had lower IC₅₀ values compared to Gly2. The higher cytotoxicity could be attributed to an increased cellular uptake as determined by ICP-MS measurements.