G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation

G-rich DNA sequences are able to fold into structures called G-quadruplexes. To obtain general trends in the influence of loop length on the structure and stability of G-quadruplex structures, we studied oligodeoxynucleotides with random bases in the loops. Sequences studied are dGGGW(i)GGGW(j)GGGW(k)GGG, with W = thymine or adenine with equal probability, and i, j, and k comprised between 1 and 4. All were studied by circular dichroism, native gel electrophoresis, UV-monitored thermal denaturation, and electrospray mass spectrometry, in the presence of 150 mM potassium, sodium, or ammonium cations. Parallel conformations are favored by sequences with short loops, but we also found that sequences with short loops form very stable multimeric quadruplexes, even at low strand concentration. Mass spectrometry reveals the formation of dimers and trimers. When the loop length increases, preferred quadruplex conformations tend to be more intramolecular and antiparallel. The nature of the cation also has an influence on the adopted structures, with K(+) inducing more parallel multimers than NH4(+) and Na(+). Structural possibilities are discussed for the new quadruplex higher-order assemblies.     

A facile and patternable method for the surface modification of carbon nanotube forests using perfluoroarylazides

A facile patterning method for the functionalization of vertically aligned carbon nanotubes is described. Modification of the surface of nanotube forests with hydrophilic, hydrophobic, or polymerizable small molecules was achieved via UV-triggered attachment of perfluoroarylazides. Multiple functionalizations of the tube surface can be achieved. Macro- and micropatterning of forest substrates were demonstrated. Superhydrophobic surfaces containing superhydrophilic regions were prepared.     

Near-infrared luminescence of nine-coordinate neodymium complexes with benzimidazole-substituted 8-hydroxyquinolines

A new class of benzimidazole-substituted 8-hydroxyquinoline ligands has been prepared that contain a monoanionic tridentate N,N,O-coordinating unit. These ligands form charge-neutral lanthanide complexes of the type [Ln(L-R) 3]. nH 2O or [Ln 2(L2) 3]. nH 2O ( n = 1-3) with early lanthanides from La (III) to Gd (III) inclusive. Crystallographic characterization was carried out for 11 complexes with 6 different ligands. In all of these structures, the lanthanide ion was found to be nine-coordinated by three ligands arranged in an "up-up-down" fashion around the metal center. The coordination environment can be described as a tricapped trigonal prism, with N atoms of quinoline rings occupying capping positions. Upon deprotonation of the ligand and complex formation, a new absorption band appears in the visible range of the spectrum with a maximum in the range of 466-483 nm and molar absorption coefficient of (7.2 - 18) x 10 (3) M (-1) cm (-1). Its origin is likely to be an intraligand phenolate-to-pyridyl charge transfer transition centered on the 8-hydroxyquinolate chromophore. Upon excitation in ligand absorption bands, new Nd (III) complexes display characteristic metal-centered luminescence in the near-infrared region from 850 to 1450 nm with quantum yields and lifetimes in solid state at room temperature as high as 0.34% and 1.2 mus, respectively.     

A temperature control technique for nonequilibrium molecular simulation

We describe a dynamical approach to thermal regulation in molecular dynamics. Temperature is moderated by a control law and an additional variable, as in Nose dynamics, but whose influence on the system decreases as the system approaches equilibrium. This device enables approximation of microcanonical averages and autocorrelation functions consistent with a given target temperature. Moreover, we demonstrate that the suggested technique is effective for the control of heat dissipation in a nonequilibrium setting, first by showing that the temperature control correctly regulates heat introduced by a rapid change to the system, and then by studying the slow relaxation of vibrational degrees of freedom (e.g., due to bonded atoms) in a solvent bath.     

Microwave-enhanced alpha-arylation of a protected glycine in water: evaluation of 3-phenylglycine derivatives as inhibitors of the tuberculosis enzyme, glutamine synthetase

A microwave-enhanced, palladium-catalyzed protocol for the alpha-arylation of a protected glycine in neat water is described. This reaction proceeds rapidly, under non-inert conditions, to afford a range of phenylglycine derivatives in moderate to good yields. Based on this alpha-arylation, a number of aryl L-methionine-SR-sulfoximine (MSO) analogues were prepared and evaluated for their Mycobacterium tuberculosis glutamine synthetase (TB-GS) inhibitory activity.     

Microscopic Li self-diffusion parameters in the lithiated anode material Li4 + xTi5O12 (0 < or = x < or = 3) measured by 7Li solid state NMR

The microscopic Li diffusion parameters in the lithiated spinel Li4 + xTi5O12, which is on its way to become a commercially used anode material in Li ion batteries, are probed for the first time via nuclear magnetic resonance spectroscopy.     

Multichannel quench-flow microreactor chip for parallel reaction monitoring

This paper describes a multichannel silicon-glass microreactor which has been utilized to investigate the kinetics of a Knoevenagel condensation reaction under different reaction conditions. The reaction is performed on the chip in four parallel channels under identical conditions but with different residence times. A special topology of the reaction coils overcomes the common problem arising from the difference in pressure drop of parallel channels having different length. The parallelization of reaction coils combined with chemical quenching at specific locations results in a considerable reduction in experimental effort and cost. The system was tested and showed good reproducibility in flow properties and reaction kinetic data generation.