A note on an SOR-like method for augmented systems

Golub et al. (2001, BIT, 41, 71–85) gave a generalizedsuccessive over-relaxation method for the augmented systems.In this paper, the connection between the SOR-like method andthe preconditioned conjugate gradient (PCG) method for the augmentedsystems is investigated. It is shown that the PCG method isat least as accurate (fast) as the SOR-like method. Numericalexamples demonstrate that the PCG method is much faster thanthe SOR-like method.     

A bio-mechanical model for coupling cell contractility with focal adhesion formation

Focal adhesions (FAs) are large, multi-protein complexes that provide a mechanical link between the cytoskeletal contractile machinery and the extracellular matrix. They exhibit mechanosensitive properties; they self-assemble upon application of pulling forces and dissociate when these forces are decreased. We rationalize this mechano-sensitivity from thermodynamic considerations and develop a continuum framework in which the cytoskeletal contractile forces generated by stress fibers drive the assembly of the FA multi-protein complexes. The FA model has three essential features: (i) the low and high affinity integrins co-exist in thermodynamic equilibrium, (ii) the low affinity integrins within the plasma membrane are mobile, and (iii) the contractile forces generated by the stress fibers are in mechanical equilibrium and change the free energies of the integrins. A general two-dimensional framework is presented and the essential features of the model illustrated using one-dimensional examples. Consistent with observations, the coupled stress fiber and FA model predict that (a) the FAs concentrate around the periphery of the cell; (b) the fraction of the cell covered by FAs increases with decreasing cell size while the total FA intensity increases with increasing cell size; and (c) the FA intensity decreases substantially when cell contractility is curtailed.     

Chaotic resonance: A simulation

Stochastic resonance is a statistical phenomenon that has been observed in periodically modulated, noise-driven, bistable systems. The characteristic signatures of the effect include an increase in the signal-to-noise of the output as noise is added to the system, and exponentially decreasing peaks in the probability density as a function of residence times in one state. Presented are the results of a numerical simulation where these same signatures were observed by adding achaotic driving term instead of a white noise term. Although the probability distributions of the noise and chaos inputs were significantly different, the stochastic and chaotic resonances were equal within the experimental error.     

Geometric Knowledge of Middle School Students in a Reform-based Mathematics Curriculum

National and international studies have found U.S. elementary students to be weak in their understandings and applications of geometric concepts. The University of Chicago School Mathematics Project's (UCMSP) Everyday Mathematics Program is one of the current reform-based elementary curricula incorporating geometry throughout the K-6 curriculum, with an emphasis on hands-on and problem-solving activities. In this study, the geometric knowledge of fifth and sixth graders using the UCSMP curriculum is compared to the knowledge of students using more traditional curricula. Because UCSMP students had been in the program since kindergarten, this research attempts to measure the longitudinal effects of such an approach. Along with an overall score, a subset of test items was used to assign each student a van Hiele level for geometric thinking, as well as a reasoning score. On all measures, UCSMP students substantially outperformed their counterparts, and nearly all differences were significant. Aspects of the UCSMP curriculum and the van Hiele model for learning geometry are discussed relative to these results.