Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) has been used to determine the mass of a double-stranded 500 base-pair (bp) polymerase chain reaction (PCR) product with an average theoretical mass of the blunt-ended (i.e. unadenylated) species of 308 859.35 Da. The PCR product was generated from the linearized bacteriophage Lambda genome which is a double-stranded template. Utilization of ethanol precipitation in tandem with a rapid microdialysis step to purify and desalt the PCR product was crucial to obtain a precise mass measurement. The PCR product (0.8 pmol/μL) was electrosprayed from a solution containing 75% acetonitrile, 25 mM piperidine, and 25 mM imidazole and was infused at a rate of 200 nL/min. The average molecular mass and the corresponding precision were determined using the charge-states ranging from 172 to 235 net negative charges. The experimental mass and corresponding precision (reported as the 95% confidence interval of the mean) was 309 406 +/- 27 Da (87 ppm). The mass accuracy was compromised due to the fact that the PCR generates multiple products when using Taq polymerase due to the non-template directed 3'-adenylation. This results in a mixture of three PCR products with nearly identical mass (i.e. blunt-ended, mono-adenylated and di-adenylated) with unknown relative abundances that were not resolved in the spectrum. Thus, the experimental mass will be a weighted average of the three species which, under our experimental conditions, reflects a nearly equal concentration of the mono- and di-adenylated species. This report demonstrates that precise mass measurements of PCR products up to 309 kDa (500 bp) can be routinely obtained by ESI-FTICR requiring low femtomole amounts. Copyright 1999 John Wiley & Sons, Ltd.     

The dynamics of ring rotation in ferrocene,nickelocene and ruthenocene by incoherent quadi-elastic neutron scattering

Incoherent quasi-elastic neutron scattering has been used to study the reorientational motions of the cyclopentadienyl rings in ferrocene, nickelocene and ruthenocene. The results for ferrocene show that the activation energy for ring rotation drops above the 164 K phase transition to 4.4 ± 0.5 kJ mol^?1 (which is approximately half its low temperature value) but the rings still appear to jump between only five orientations on the observable time scale. At room temperature, the rings in nickelocene appear to behave the same as in ferrocene but in ruthenocene they reorientate much less frequently and resemble those in ferrocene below 164 K.     

Hydrogen bonding in potassium hydrogen maleate and some simple derivatives studied by inelastic neutron scattering spectroscopy

Inelastic neutron scattering spectra (300–2500 cm^?1) of KH(CHCO₂)₂, KD(CHCO₂)₂, KH(CDCO₂)₂ and KH(CHCO₂ · CClCO₂) have been obtained and the vibrations of the hydrogen bond, with the exception of ν₂(OHO), assigned. This is the first assignment of these vibrations in a centrosymmetric intramolecularly hydrogen bonded complex. ν_as(OHO) was found to be heavily mixed and to give rise to a strong doublet in the INS spectra.     

Revisiting β-casein as a stabilizer for lipid liquid crystalline nanostructured particles

Lipid liquid crystalline nanoparticles such as cubosomes and hexosomes have unique internal nanostructures that have shown great potential in drug and nutrient delivery applications. The triblock copolymer, Pluronic F127, is usually employed as a steric stabilizer in dispersions of lipid nanostructured particles. In this study, we investigated the formation, colloidal stability and internal nanostructure and morphology of glyceryl monooleate (GMO) and phytantriol (PHYT) cubosome dispersions on substituting β-casein with F127 in increasing proportion as the stabilizer. Internal structure and particle morphology were evaluated using small-angle X-ray scattering (SAXS) and cryo-transmission electron microscopy (cryo-TEM), while protein secondary structure was studied using synchrotron radiation circular dichroism (SRCD). The GMO cubosome dispersion stabilized by β-casein alone displayed a V(2) (Pn3m) phase structure and a V(2) to H(2) phase transition at 60 °C. In comparison, F127-stabilized GMO dispersion had a V(2) (Im3m) phase structure and the H(2) phase only appeared at higher temperature, that is, 70 °C. In the case of PHYT dispersions, only the V(2) (Pn3m) phase structure was observed irrespective of the type and concentration of stabilizers. However, β-casein-stabilized PHYT dispersion displayed a V(2) to H(2) to L(2) transition behavior upon heating, whereas F127-stabilized PHYT dispersion displayed only a direct V(2) to L(2) transition. The protein secondary structure was not disturbed by interaction with GMO or PHYT cubosomes. The results demonstrate that β-casein provides steric stabilization to dispersions of lipid nanostructured particles and avoids the transition to Im3m structure in GMO cubosomes, but also favors the formation of the H(2) phase, which has implications in drug formulation and delivery applications.     

The influence of a transverse magnetic field on a subnormal glow discharge in air

In subnormal glow discharge under d.c. excitation at different pressure in a varying transverse magnetic field (0 to 30 G) some measurements have been carried out for various initial average tube currents. The voltage across the discharge increases and average tube current and residual current decreases in the magnetic field. With the help of Beckman’s expression [4] for the axial field and the electron density distribution in a transverse magnetic field the observed variation of current and voltage can be satisfactorily explained. The variation of axial electric field with transverse magnetic field can be represented to a fair degree of accuracy by the derived equation. The behaviour of residual current with magnetic field has been observed in these oscillations.     

Nanostructured nonionic thymidine nucleolipid self-assembly materials

Three nucleoside lipids have been synthesized: 3'-oleoylthymidine, 3',5'-dioleoylthymidine, and 3'-phytanoylthymidine. Differential scanning calorimetry and X-ray diffraction have been employed to characterize the physical properties of these neat lipids. Polarizing optical microscopy, small-angle X-ray scattering, and cryo-transmission electron microscopy techniques have been used to investigate the phase behavior in aqueous systems. Both oleoyl-based nucleoside lipids adopted a lamellar crystalline phase in the neat form at room temperature, and the phytanoyl derivative exhibited a fluid isotropic phase. Under excess water conditions, the presence of one branched (phytanoyl) or one unsaturated (oleoyl) chain promoted the formation of a liquid-crystalline lamellar phase at physiological temperatures. In contrast, the 3',5'-dioleoylthymidine derivative is nonswelling and does not exhibit lyotropic liquid-crystalline phase behavior. The nucleolipids' propensity for DNA-type binding and recognition has been evaluated by using a monolayer system to measure surface pressure-area isotherms in a Langmuir trough and indicates that the nucleoside base is available for nonspecific hydrogen bonding in the monolayer liquid expanded state for the single-chain nucleolipids but not for the dual-chain amphiphile.     

High-spin particle states in 151Sm studied with the (α, 3He) reaction

High-spin states have been located in ¹⁵¹Sm by means of the (α, ³He) reaction with 40 MeV α-particles. The scattered particles were momentum analyzed in a QMG/2 magnetic spectrometer and recorded in a position sensitive detector. Several high-spin states were observed in the energy range below 1.7 MeV excitation. The previously unknown strongly populated levels at 867 and 1480 keV can most likely be interpreted as $\text{13}\text{2}{}^{\mathrm{+}}$ states. Both the deduced nuclear structure factors and the energy location of these levels are in excellent agreement with a simple Coriolis coupling calculation.     

A revised level scheme for 158Tb

Four separate reaction studies have been performed which show how the accepted nuclear level scheme for ¹⁵⁸Tb must be modified. This nuclide is of current interest because of the recent suggestion that its electron-capture decay may yield a means of determining the neutrino mass.