Specific labeling of cell surface proteins with chemically diverse compounds

The specific and covalent labeling of fusion proteins with synthetic molecules opens up new ways to study protein function in the living cell. Here we present a novel method that allows for the specific and exclusive extracellular labeling of proteins on the surfaces of live cells with a large variety of synthetic molecules including fluorophores, protein ligands, or quantum dots. The approach is based on the specific labeling of fusion proteins of acyl carrier protein with synthetic molecules through post-translational modification catalyzed by phosphopantetheine transferase. The specificity and versatility of the labeling should allow it to become an important tool for studying and manipulating cell surface proteins and for complementing existing approaches in cell surface engineering.     

Control of the Diels-Alder-Addition Regioselectivity by Remote Olefins. Syntheses and Cycloadditions of 2,3,5-Trimethylidenebicyclo[2.2.1]heptane and 2,3,5,6,7-Pentamethylidenebicyclo[2.2.2]octane

The syntheses of 2,3,5-trimethylidenebicyclo[2.2.1]heptane ( 1 ) and 2,3,5,6,7-pentamethylidenebicyclo[2.2.2]-octane ( 2 ) are reported. The Diels-Alder additions of the diene moieties of these polyenes can be regioselective, probably because of a possible transannular interaction between the homoconjugated methylidene and s-cis-buta-diene groups.     

Stereoselective Double Functionalization of Iron-Carbonyl Complexes of 5,6,7,8-Tetramethylidenebicyclo[2.2.2]oct-2-ene. Crystal Structure and Absolute Configuration of (–)-trans-μ-[(2S,5R,7S)-C,5,6,C-η:C,7,8,C-η-(6,7,8-trimethylidene-5-((Z)-2-oxopropylidene)-2-bicyclo[2.2.2]octyl acetate)]-bis(tricarbonyliron)

The Friedel-Crafts monoacylation of trans-η-[(1RS,2RS,4SR,5SR,6RS,7SR,8SR)-C,5,6,C-η:C,7,8,C-η-(5,6,7,8-tetramethylidene-2-bicyclo[2.2.2]octyl acetate)]-bis(tricarbonyliron) ((±)- 5 ) is highly stereoselective and yields trans-η-[(1RS,2RS,4RS,5SR,6RS,7RS,8SR)-C,6-η,oxo-σ:C,7,8,C-η-(6,7,8-trimethylidene-5-((Z)-2-oxopropylidene)-2-bicyclo[2.2.2]octyl acetate)]-bis(tricarbonyliron) ((±)- 8 ) which equilibrates with the trans-η-[(1RS,2RS,4RS,5SR,6RS,7RS,8SR)-C,5,6,C-η:C,7,8,C-η-(6,7,8-trimethylidene-5-((Z)-2-oxopropylidene)-2-bicyclo[2.2.2]octyl acetate)]-bis(tricarbonyliron) ((±)- 9 ) on heating. Optically pure (–)- 9 has been prepared from the corresponding optically pure alcohol (+)- 4 . The structure and absolute configuration of (–)- 9 was established by single-crystal X-ray diffraction.     

Unambiguous Proof for Alcoxycarbonyl-group Migration in Wagner-Meerwein Rearrangements

In HSO₃F/SO₂ClF the β-hydroxy esters Ph-CHOH-CMe₂-COOR ( 1 , R?Me, Et) are doubly protonated, then transformed into the fluorosulfates 7 and (partly) into the fluorides 8. At ?15°, both 7 and 8 undergo a rearrangement, forming derivatives of Me₂C?C(Ph)COOR ( 2 ). By labelling 1 with ¹³C, singly (¹³C(3)) and doubly (¹³C(1,3)), it could be shown that exclusively the ROOC groups undergo a 1,2-shift. Compound 2 is also formed in HSO₃F/SO₂ClF from the isomeric Me₂COH-CHPh-COOR ( 3 ) by elimination, and less easily from the α-hydroxy ester Ph-CMe₂-CHOH-COOR (5) via a phenyl 1,2-shift. Another isomer, Ph-C(OH)Me-CHMe-COOR (4) gives products different from 2 . Using more acidic systems containing SbF₅, the free carbenium ions 13 (Ph-CH⁺-CMe₂-COOR) can be stabilized; they do not form 2 , possibly because of complexation of the ester group with SbF₅. The energy profile and the mechanism of the rearrangement 1 → 2 are discussed.     

Phosphan-, Phosphit- und Phosphido-Komplexe des Vanadiums(V)

Phosphane, Phosphite, Phosphido, Complexes of Vanadium(V) Complex formation of tert-butylimidovanadium(V)trichloride ( 1 ) with phosphanes und phosphites has been studied. Syntheses of phosphidovanadium(V) compounds ^tC₄H₉N?VCp(NH^tC₄H₉)[P(SiMe₃)₂] and ^tC₄H₉N?VCp(NⁱProp₂)(PR₂) (R?SiMe₃, Ph) are described starting from the corresponding chlorovanadium(V) complexes. The reaction of 1 with silver hexafluorophosphate yields a bis(fluoro)phosphidovanadium(IV complex [(μ-PF₂)₂V₂Cl₂)(N^tC₄H₉)₂]; as primary intermediate product of the unknown redox reaction a cationic vanadium(V) complex [^tC₄H₉N?VCl₂ · PPh₃]⁺PF₆^? has been isolated. 1 reacts with an excess of diisopropylamine forming ^tC₄H₉N?V(NⁱProp₂)Cl₂ ( 16 ); in addition the following diisopropylamido-tert-butylimidovanadium(V) compounds ^tC₄H₉N?VCp(NⁱProp₂)Cl ( 3 ) and ^tC₄H₉N?V(NⁱProp₂)X₂ (X?CH₂CMe₃, O^tC₄H₉, CH₃COO) has been prepared. All compounds obtained are characterized by ¹H, ⁵¹V, ³¹P NMR spectroscopy. The X-ray diffraction analysis of 16 and 3 indicate a planar coordination sphere of the amido nitrogen atom.     

Synthesis of (+)-1,3:2,5-dianhydroviburnitol ((+)-(1R,2R,3S,5R,6S)-4,7-dioxatricyclo[3.2.1.03,6]octan-2-ol)

Epoxidation of (?)-(1R,2R,4R)-2-endo-cyano-7-oxabicyclo[2.2.1]hept-5-en-2-exo-yl acetate ((?)-5) followed by saponification afforded (+)-(1R,4R,5R,6R)-5,6-exo-epoxy-7-oxabicyclo[2.2.1]heptan-2-one ((+)-7). Reduction of (+)-7 with diisobutylaluminium hydride (DIBAH) gave (+)-1,3:2,5-dianhydroviburnitol ( = (+)-(1R,2R,3S,4R,6S)-4,7-dioxatricyclo[3.2.1.0^3,6]octan-2-ol; (+)-3). Hydride reductions of (±)-7 were less exo-face selective than reductions of bicyclo[2.2.1]heptan-2-one and its derivatives with NaBH₄, AlH₃, and LiAlH₄ probably because of smaller steric hindrance to endo-face hydride attack when C(5) and C(6) of the bicyclo-[2.2.1]heptan-2-one are part of an exo oxirane ring.     

Syntheses of (+)- and (–)-Methyl 8-Epinonactate and (+)- and (–)-Methyl Nonactate

In four synthetic steps, (+)- and (–)-methyl 8-epinonactate ((+)- and (–)− 4 ) have been derived from (+)- and (–)-7-oxabicyclo[2.2.1]heptan-2-one ((+)- and (–)− 9 ), respectively. The (+)- and (–)-methyl nonactate ((+)- and (–)− 3 ) were obtained from (+)- and (–)− 4 , respectively, by Mitsunobu displacement reactions. Optical resolution of (±)− 9 via chromatographic separation of the corresponding N-methyl-S-alkyl-S-phenylsulfoximides 24 and 25 yielded the starting materials (+)- and (–)− 9 , respectively.     

Crystallographic and Computational Studies of Non-Covalent Interactions of Molecular Clips with a Series of Small Solvent Molecules

Molecular clips hold the potential of self-association and the ability to form host–guest complexes. Here we describe the synthesis of a 1,2-dimethoxyphenyl terminated glycoluril molecular clip (2) that binds with smaller solvent molecules by π?H–C and C=O?H–O non-covalent interactions. We obtained single crystals of 2 and 2 + CH₂Cl₂, CH₃OH, CH₃CN, and DMF solvents complexed within the clip. These solvents always form two π?H–C interactions between the aromatic rings in the clip, and CH₃OH formed an additional C=O?H–O hydrogen bond with the glycoluril carbonyl group. Based on single crystal data we found that π?H–C interactions of 2 + CH₂Cl₂ are stronger than 2 + CH₃CN and 2?+?DMF, due to the presence of stronger electron withdrawing groups in CH₂Cl₂, which lead to a decrease in dihedral angle of two glycoluril aromatic planes. We also investigated the non-covalent interaction energies of these solvent molecules with 2 using computational methods.

Graphical Abstract

Several solvent adducts of a glycoluril derivative have been isolated and characterized by single crystal X-ray diffraction, revealing two common pi?H–C non-covalent bonds within the molecular clip.

Open image in new window

     

Preparation and Diels-Alder Reactivity of 2,3,5,6,7,8-Hexamethylidenebicyclo [2.2.2]octane (‘[2.2.2]Hericene’). Force-field calculations of exocyclic dienes as a moiety of bicyclic skeletons

The [2.2.2]hericene ( 6 ), a bicyclo[2.2.2]octane bearing three exocyclic s-cis-butadiene units has been prepared in eight steps from coumalic acid and maleic anhydride. The hexaene 6 adds successively three mol-equiv. of strong dienophiles such as ethylenetetracarbonitrile (TCE) and dimethyl acetylenedicarboxylate (DMAD) giving the corresponding monoadducts 17 and 20 (k₁), bis-adducts 18 and 21 (k₂) and tris-adducts 19 and 22 (k₃), respectively. The rate constant ratio k₁/k₂ is small as in the case of the cycloadditions of 2,3,5,6-tetramethylidene-bicyclo [2.2.2]octane ( 3 ) giving the corresponding monoadducts 23 and 27 (k₁) and bis-adducts 25 and 29 (k₂) with TCE and DMAD, respectively. Constrastingly, the rate constant ratio k₂/k₃ is relatively large as the rate constant ratio k₁/k₂ of the Diels-Alder additions for 5,6,7,8-tetramethylidenebicyclo [2.2.2]oct-2-ene ( 4 ) giving the corresponding monoadducts 24 and 28 (k₁) and bis-adducts 26 and 30 (k₂). The following second-order rate constants (toluene, 25°) and activation parameters were obtained for the TCE additions: 3 +TCE→ 23 : k₁ = 0.591±0.012 mol^?1·l·s^?1, ΔH^≠=10.6±0.4 kcal/mol, and ΔS^≠ = ?24.0±1.4 cal/mol·K (e.u.); 23 +TCE→ 25 : k₂=0.034±0.0010 mol^?1·l·s^?1, ΔH^≠ = 10.6±0.6 kcal/mol, and ΔS^≠ = ?29.7±2.0 e.u.; 4 +TCE→ 26 : k₁ = 0.172±0.035 mol^?1·l·s^?1, ΔH^≠ 11.3±0.8 kcal/mol, and ΔS^≠ = ?24.0±2.8 e.u.; 24 +TCE→ 26 : k₂ = (6.1±0.2)·10^?4 mol^?1·l·s^?1, ΔH^≠ = 13.0±0.3 kcal/mol, and ΔS^≠ = ?29.5±0.8 e.u.; 6 +TCE→ 17 : k₁ = 0.136±0.002 mol^?1·l·s^?1, ΔH^≠ = 11.3±0.2 kcal/mol, and ΔS^≠ = ?24.5±0.8 e.u.; 17 +TCE→ 18 : k₂ = 0.0156±0.0003 mol^?1·l·s^?1, ΔH^≠ = 10.9±0.5 kcal/mol, and ΔS^≠ = ?30.1 ± 1.5 e.u.; 18 +TCE→ 19 : k₃=(5±0.2) · 10^?5 mol^?1 mol^?1 ·l·s^?1, ΔH^≠ = 15±3 kcal/mol, and ΔS^≠ = ?28 ± 8 e.u. The following rate constants were evaluated for the DMAD additions (CD₂Cl₂, 30°): 6 +DMAD→ 20 : k₁ = (10±1)·10^?4 mol^?1 · l·s^?1; 20 +DMAD→ 21 : k₂ = (6.5±0.1) · 10^?4 mol^?1 ·l·^?1; 21 +DMAD→ 22 : k₃ = (1.0±0.1) · 10^?4 mol^?1 ·l·s^?1. The reactions giving the barrelene derivatives 19, 22, 26 and 30 are slower than those leading to adducts that are not barrelenes. The former are estimated less exothermic than the latter. It is proposed that the Diels-Alder reactivity of exocyclic s-cis-butadienes grafted onto bicycle [2.2.1]heptanes and bicyclo [2.2.2]octanes that are modified by remote substitution of the bicyclic skeletons can be affected by changes inthe exothermicity of the cycloadditions, in agreement with the Dimroth and Bell-Evans-Polanyi principle. Force-field calculations (MMPI 1) of 3, 4, 6 and related exocyclic s-cis-butadienes as a moiety of bicyclo [2.2.2]octane suggested single minimum energy hypersurfaces for these systems (eclipsed conformations, planar dienes). Their flexibility decreases with the degree of unsaturation of the bicyclic skeleton. The effect of an endocyclic double bond is larger than that of an exocyclic diene moiety.