Short monolithic columns for purification and fractionation of peptide samples for matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry analysis in proteomics

This study records a novel application of methacrylate-based monolithic columns for MALDI-TOF/TOF MS analyses in proteomics for pre-concentration and separation of peptides derived from protein digestion. Reversed-phase monolithic capillary columns (30 mm × 0.32 mm i.d.) were created inside the fused silica capillary via thermal-initiated free-radical polymerization of ethylene glycol dimethacrylate and lauryl methacrylate monomers in the presence of 1-propanol and 1,4-butandiol as a porogen system. The elution of peptides was achieved using a linear gradient of acetonitrile from 0 to 60% in water with 0.1% trifluoroacetic acid formed in a microsyringe. Individual fractions of separated peptides were collected on the MALDI target spots covered with alpha-cyano-4-hydroxycinnamic acid used as a matrix and then they were analyzed using MALDI-TOF/TOF mass spectrometry. The developed method was tested with a mixture of tryptic peptides from bovine serum albumin and its applicability was also tested for tryptic in-gel digests from barley grain extracts of water soluble proteins separated using SDS gel electrophoresis. The number of detected peptides was approximately three to four times higher compared to the analysis without previous separation. These results show an improved quality of sample information with the higher amount of identified peptides which increased protein sequence coverage and improved sensitivity of mass spectrometry measurements.     

Shape- and Size-Selective Preparation of Hectorite-Supported Ruthenium Nanoparticles for the Catalytic Hydrogenation of Benzene

The cationic organometallic aqua complexes formed by hydrolysis of [(C₆H₆)₂RuCl₂]₂ in water, mainly [(C₆H₆)Ru(H₂O)₃]²⁺, intercalate into white sodium hectorite, replacing the sodium cations between the anionic silicate layers. The yellow hectorite thus obtained reacts in water with molecular hydrogen (50 bar, 100 °C) to give a dark suspension containing a black hectorite in which large hexagonally shaped ruthenium nanoparticles (20–50 nm) are intercalated between the anionic silicate layers, the charges of which being balanced by hydronium cations. If the reduction with molecular hydrogen (50 bar, 100 °C) is carried out in various alcohols, spherical ruthenium nanoparticles of smaller size (3–38 nm depending on the alcohol) are obtained. In alcohols other than methanol, the reduction also works without H₂ under reflux conditions, the alcohol itself being the reducing agent; the ruthenium nanoparticles obtained in this case are spherical and small (2–9 nm) but tend to aggregate to form clusters of nanoparticles. Whereas the ruthenium nanoparticles prepared by reduction of the yellow hectorite in refluxing alcohols without hydrogen pressure are almost inactive, the nanoparticles formed by hydrogen reduction catalyze the hydrogenation of benzene to give cyclohexane under mild conditions (50 °C) with turnover frequencies up to 6500 catalytic cycles per hour, the best solvent being ethanol. Dedicated to Professor C. N. R. Rao, pioneer of nanocluster chemistry, on the occasion of his 75th birthday.     

Impact of phase composition on water adsorption on inorganic hybrids "salt/silica"

The effect of a "guest-host" interaction on the phase composition and sorption properties of the composite sorbents "salt in a porous host matrix" has been studied. The matrix was a mesoporous silica of KSK type, while the confined salts were CaCl(2), CuSO(4), MgSO(4), and Na(2)SO(4). Both structure and properties of the composites were studied by X-ray diffraction, titration in the pH range of 2-9, differential dissolution, and TG techniques. Chemical interaction between the silica surface and the salt during preparation results in the formation of the salt surface complexes and stabilization of the dispersed salt in two phases, namely, a crystalline phase and an X-ray amorphous phase. The water sorption properties of the composites depend on the phase composition and can be intently modified by using variation of the preparation conditions.     

Synthesis and structures of silicon-, germanium- and tin-containing tungsten imido alkyl complexes (ArN)2W(CH2EMe3)2 (E = Si, Ge, Sn)

The novel silicon-, germanium- and tin-containing imido alkyl complexes of tungsten of the type (ArN)₂W(CH₂EMe₃)₂ (; E = Si (1), Ge (2), Sn (3)) have been prepared by the reactions of (ArN)₂WCl₂(dme) (dme = 1,2-dimethoxyethane) with heteroelement-containing alkyllithium or Grignard reagents Me₃ECH₂Li (E = Si, Ge), Me₃ECH₂MgCl (E = Ge, Sn). The title compounds were isolated in high yields as crystalline solids and characterized by elemental analysis, IR, ¹H, ¹³C, ²⁹Si and ¹¹⁹Sn NMR spectroscopy and X-ray diffraction studies. The geometry of the W atoms in the compounds can be described as a distorted tetrahedron.     

Reaction of polyhaloalkyl-substituted chromones, pyrones, and furanones with salicylaldehydes as a direct route to fused 2H-chromenes

Polyhaloalkyl-substituted chromones, gamma-pyrones, and beta-furanones react with salicylaldehydes in the presence of piperidine to give a wide variety of fused 2H-chromenes in good yields. This novel annulation reaction presumably proceeds by a tandem intermolecular oxa-Michael addition and subsequent intramolecular Mannich condensation.     

Capillary electrophoresis of proteins 2003-2005

This review article with 304 references describes recent developments in CE of proteins, and covers the two years since the previous review (Hutterer, K., Dolník, V., Electrophoresis 2003, 24, 3998-4012) through Spring 2005. It covers topics related to CE of proteins, including modeling of the electrophoretic migration of proteins, sample pretreatment, wall coatings, improving separation, various forms of detection, special electrophoretic techniques such as affinity CE, CIEF, and applications of CE to the analysis of proteins in real-world samples including human body fluids, food and agricultural samples, protein pharmaceuticals, and recombinant protein preparations.     

Natural products from medicinal plants: non-alkaloidal natural constituents of the Thalictrum species

Thalictrum is an important plant genus that is widely used in traditional medicine. In this review considerable attention has been given to triterpenoid saponins in connection with their specific distribution in the Thalictrum genus and with their biological activity. All other non-alkaloid compounds isolated from the Thalictrum genus are also reviewed; these metabolites are discussed in relation to their structural features and to their role in the plants.     

Effect of photonic crystal structure on the nonlinear optical anisotropy of birefringent porous silicon

Anisotropic photonic crystal structures consisting of birefringent porous silicon layers with alternating porosity were fabricated. The in-plane birefringence formed as a result of anisotropic etching in Si(110) results in unique multilayered structures with two distinct photonic bandgaps for orthogonal light polarizations. Nonlinear optical studies based on the third-harmonic generation from these structures demonstrate variation in the symmetry of the nonlinear optical response.     

Modification of Arabinogalactan Isolated from Larix sibirica Ledeb. into Sulfated Derivatives with the Controlled Molecular Weights

The process of sulfation of arabinogalactan—a natural polysaccharide from Larix sibirica Ledeb.—with sulfamic acid in 1,4-dioxane using different activators has been studied for the first time. The dynamics of the molecular weight of sulfated arabinogalactan upon variation in the temperature and time of sulfation of arabinogalactan with sulfamic acid in 1,4-dioxane has been investigated. It has been found that, as the sulfation time increases from 10 to 90 min, the molecular weights of the reaction products grow due to the introduction of sulfate groups without significant destruction of the initial polymer and sulfation products. Sulfation at 95 °C for 20 min yields the products with a higher molecular weight than in the case of sulfation at 85 °C, which is related to an increase in the sulfation rate; however, during the further process occurring under these conditions, sulfation is accompanied by the destruction and the molecular weight of the sulfated polymer decreases. The numerical optimization of arabinogalactan sulfation process has been performed. It has been shown that the optimal parameters for obtaining a product with a high sulfur content are a sulfamic acid amount of 20 mmol per 1 g of arabinogalactan, a process temperature of 85 °C, and a process time of 2.5 h.     

A Very Smooth Ride in a Rough Sea

It has been known for some time that a 3D incompressible Euler flow that has initially a barely smooth velocity field nonetheless has Lagrangian fluid particle trajectories that are analytic in time for at least a finite time Serfati (C. R. Acad. Sci. Paris Série I 320:175–180, 1995), Shnirelman (Glob. Stoch. Anal., http://arxiv.org/abs/1205.5837v1, 2012). Here an elementary derivation is given, based on Cauchy’s form of the Euler equations in Lagrangian coordinates. This form implies simple recurrence relations among the time-Taylor coefficients of the Lagrangian map, used here to derive bounds for the C ^1,γ Hölder norms of the coefficients and infer temporal analyticity of Lagrangian trajectories when the initial velocity is C ^1,γ.