Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level

Monitoring of intracellular redox status in a bacterial cell provides vital information about the physiological status of the cell, which can be exploited in several applications such as metabolic engineering and computational modeling. Fluorescent protein-based genetically encoded sensors can be used to monitor intracellular oxidation/reduction status. This study reports the development of a redox sensor for intracellular measurements using fluorescent protein pairs and the phenomenon of Förster resonance energy transfer (FRET). For the development of the sensor, fluorescent proteins Citrine and Cerulean were genetically modified to carry reactive cysteine residues on the protein surface close to the chromophore and a constructed FRET pair was fused using a biotinylation domain as a linker. In oxidized state, the FRET pairs are in close proximity by labile disulfide bond formation resulting in higher FRET efficiency. In reducing environment, the FRET is diminished due to the increased distance between FRET pairs providing large dynamic measurement range to the sensor. Intracellular studies in Escherichia coli mutants revealed the capability of the sensor in detecting real-time redox variations at single cell level. The results were validated by intensity based and time resolved measurements. The functional immobilization of the fluorescent protein-based FRET sensor at solid surfaces for in vitro applications was also demonstrated. Graphical Abstract

Schematic representation of FRET-based redox sensor     

Arabinoxylan structure affects the reinforcement of films by microfibrillated cellulose

The chemical structure of rye arabinoxylan (rAX) was systematically modified, exploiting selective enzymes to mimic different naturally occurring xylans, i.e., its degree of substitution (DS) was decreased using α-l-arabinofuranosidase, and a controlled decrease in the degree of polymerization (DP) was performed using endo-1,4-β-d-xylanase. The arabinose to xylose ratio was decreased from 0.45 to 0.27 and the weight-average molar mass was decreased from 184,000 to 49,000 g/mol. The resulting samples were used to prepare films, as such, and with 15% (wt. − %) softwood-derived microfibrillated cellulose (MFC) to obtain novel plant-derived biocomposite materials. The enzymatic tailoring of rAX increased the crystallinity of films, evidenced by X-ray diffraction studies, and the addition of MFC to the debranched, low DS rAX induced the formation of ordered structures visible with polarizing optical microscopy. MFC decreased the moisture uptake of films and increased the relative humidity of softening of the films, detected with moisture scanning dynamic mechanical analysis. For the first time, the chemical structure of xylan was proven to significantly affect the reinforcement potential of nano-sized cellulose, as the tensile strength of films from high DP rAXs, but not that of low DP rAXs, clearly increased with the addition of MFC. At the same time, MFC only increased the Young’s modulus of films from rAX with high arabinose content, regardless of DP.     

Determination of mineral and trace element concentrations in pine needles by ICP-OES: evaluation of different sample pre-treatment methods

In the present study, the determination of mineral and trace elements (Al, B, Ca, Cu, Fe, K, Mg, Mn, Na, P and Zn) from pine needles using three sample pre-treatment methods followed by inductively coupled plasma optical emission spectrometry, was examined. Sample pre-treatment methods tested were microwave digestion, ultrasound-assisted digestion and dry ashing. The new ultrasound-assisted digestion method was optimised by the analysis of the standard reference material (SRM) 1575a (pine needles) sample. The speed of dry ashing method was significantly increased by ultrasound dissolution after ashing. All the ICP-OES measurements were performed in robust plasma conditions which were tested by measuring the Mg II 280.270 nm/Mg I 285.213 nm line intensity ratios. The microwave digestion resulted generally in slightly higher element concentrations than ultrasound-assisted digestion. B, Cu and Na resulted in such low concentrations that they could not be accurately determined by using the microwave digestion method. The t-tests found no significant differences between the certified and the determined element concentrations of the SRM 1575a using the dry ashing method followed with ultrasound dissolution.     

Branched immersions and braids

Branch points of a real 2-surface Σ in a 4-manifold M generalize branch points of complex curves in complex surfaces: for example, they can occur as singularities of minimal surfaces. We investigate such a branch point p when Σ is topologically embedded. It defines a link L(p), the components of which are closed braids with the same axis up to orientation. If Σ is closed without boundary, the contribution of p to the degree of the normal bundle of Σ in M can be computed on the link L(p), in terms of the algebraic crossing numbers of its components and of their linking numbers with one another.      

Conical upper density theorems and porosity of measures

We study how measures with finite lower density are distributed around (n−m)-planes in small balls in Rn. We also discuss relations between conical upper density theorems and porosity. Our results may be applied to a large collection of Hausdorff and packing type measures.     

Spectroscopic elucidation of pseudo-base formation from benzo[8,9]quinoliziono[4,5,6,7-fed]phenanthrindyliums

¹³C and ¹H NMR spectra and UV spectra are recorded and assigned for a variety of substituted and hetero derivatives of benzo[8,9]quinolizino[4,5,6,7-fed]phenanthrindyliums. Large specific effects of traces of water on these spectra are traced to pseudo-base formation.     

A 1,4-photochemical aryl shift

1-Aryl-2-(2′-benzimidazolyl)-4,6-diphenyl-pyridiniums are converted photochemically into 2-[2′-(1′-arylbenzimidazolyl)]-4,6-diphenylpyridines. X-Ray crystal analysis comfirms the structure for the $\text{p}$-chlorophenyl derivative.     

Reduction of the virtual space for coupled-cluster excitation energies of large molecules and embedded systems

We investigate how the reduction of the virtual space affects coupled-cluster excitation energies at the approximate singles and doubles coupled-cluster level (CC2). In this reduced-virtual-space (RVS) approach, all virtual orbitals above a certain energy threshold are omitted in the correlation calculation. The effects of the RVS approach are assessed by calculations on the two lowest excitation energies of 11 biochromophores using different sizes of the virtual space. Our set of biochromophores consists of common model systems for the chromophores of the photoactive yellow protein, the green fluorescent protein, and rhodopsin. The RVS calculations show that most of the high-lying virtual orbitals can be neglected without significantly affecting the accuracy of the obtained excitation energies. Omitting all virtual orbitals above 50 eV in the correlation calculation introduces errors in the excitation energies that are smaller than 0.1 eV. By using a RVS energy threshold of 50 eV, the CC2 calculations using triple-ζ basis sets (TZVP) on protonated Schiff base retinal are accelerated by a factor of 6. We demonstrate the applicability of the RVS approach by performing CC2/TZVP calculations on the lowest singlet excitation energy of a rhodopsin model consisting of 165 atoms using RVS thresholds between 20 eV and 120 eV. The calculations on the rhodopsin model show that the RVS errors determined in the gas-phase are a very good approximation to the RVS errors in the protein environment. The RVS approach thus renders purely quantum mechanical treatments of chromophores in protein environments feasible and offers an ab initio alternative to quantum mechanics/molecular mechanics separation schemes.     

Harnuntersuchung

Ohne Zusammenfassung