Nucleic acid secondary structures containing the double-headed nucleoside 5'(S)-C-(2-(thymin-1-yl)ethyl)thymidine

Oligodeoxynucleotides containing the double-headed nucleoside 5'(S)-C-(2-(thymin-1-yl)ethyl)thymidine were prepared by standard solid phase synthesis. The synthetic building block for incorporating the double-headed moiety was prepared from thymidine, which was stereoselectively converted to a protected 5'(S)-C-hydroxyethyl derivative and used to alkylate the additional thymine by a Mitsunobu reaction. The oligodeoxynucleotides were studied in different nucleic acid secondary structures: duplexes, bulged duplexes, three-way junctions and artificial DNA zipper motifs. The thermal stability of these complexes was studied, demonstrating an almost uniform thermal penalty of incorporating one double-headed nucleoside moiety into a duplex or a bulged duplex, comparable to the effects of the previously reported double-headed nucleoside 5'(S)-C-(thymin-1-yl)methylthymidine. The additional base showed only very small effects when incorporated into DNA or RNA three-way junctions. The various DNA zipper arrangements indicated that extending the linker from methylene to ethylene almost completely removed the selective minor groove base-base stacking interactions observed for the methylene linker in a (-3)-zipper, whereas interactions, although somewhat smaller, were observed for the ethylene linker in a (-4)-zipper motif.     

Enhanced protein adsorption due to charge regulation

When a protein molecule approaches a charged surface, its protonation state can undergo dramatic changes due to the imposed electric potential. This has a large impact on adsorption strengths that may be enhanced by several kT. Using mesoscopic simulation techniques as well as analytical theories, we have investigated this regulation mechanism and demonstrate how it is influenced by salt concentration and solution pH. Using hisactophilin as a test case, we show how the binding to a lipid membrane is governed by small changes in pH and that this is intimately coupled to the charge regulation mechanism.     

A comparison of the drag-reducing benefits of riblets in internal and external flows

Equivalent drag-reducing performance is observed with 3 M riblets in fully developed internal (pipe) and developing external (flat plate) flows. Drag reduction begins around h ⁺ = 3, peaks between 6 and 9% at about h ⁺ = 12, and becomes zero for a value of h ⁺ between 20 and 30. In laminar pipe flow no significant change in drag is observed with the 3 M riblets present. At high Reynolds numbers, after exhibiting fully rough behaviour, friction factors for the 3 M riblets are observed to monotonically decrease with increasing Reynolds number.     

A Novel Relative Permeability Model Based on Mixture Theory Approach Accounting for Solid–Fluid and Fluid–Fluid Interactions

A novel model is presented for estimating steady-state co- and counter-current relative permeabilities analytically derived from macroscopic momentum equations originating from mixture theory accounting for fluid–fluid (momentum transfer) and solid–fluid interactions (friction). The full model is developed in two stages: first as a general model based on a two-fluid Stokes formulation and second with further specification of solid–fluid and fluid–fluid interaction terms referred to as \(R_{{i}}\) (i =  water, oil) and R, respectively, for developing analytical expressions for generalized relative permeability functions. The analytical expressions give a direct link between experimental observable quantities (end point and shape of the relative permeability curves) versus water saturation and model input variables (fluid viscosities, solid–fluid/fluid–fluid interactions strength and water and oil saturation exponents). The general two-phase model is obeying Onsager’s reciprocal law stating that the cross-mobility terms \(\lambda _\mathrm{wo}\) and \(\lambda _\mathrm{ow}\) are equal (requires the fluid–fluid interaction term R to be symmetrical with respect to momentum transfer). The fully developed model is further tested by comparing its predictions with experimental data for co- and counter-current relative permeabilities. Experimental data indicate that counter-current relative permeabilities are significantly lower than corresponding co-current curves which is captured well by the proposed model. Fluid–fluid interaction will impact the shape of the relative permeabilities. In particular, the model shows that an inflection point can occur on the relative permeability curve when the fluid–fluid interaction coefficient \(I>0\) which is not captured by standard Corey formulation. Further, the model predicts that fluid–fluid interaction can affect the relative permeability end points. The model is also accounting for the observed experimental behavior that the water-to-oil relative permeability ratio \(\hat{{k}}_{\mathrm{rw}} /\hat{{\mathrm{k}}}_{\mathrm{ro}} \) is decreasing for increasing oil-to-water viscosity ratio. Hence, the fully developed model looks like a promising tool for analyzing, understanding and interpretation of relative permeability data in terms of the physical processes involved through the solid–fluid interaction terms \(R_{{i}}\) and the fluid–fluid interaction term R.     

The Nano-Jackhammer effect in probing near-surface mechanical properties

Because of its ease of implementation and insensitivity to indenter drift, dynamic indentation techniques have been frequently used to measure mechanical properties of bulk and thin film materials as a function of indenter displacement. However, the actual effect of the oscillating tip on the material response has not been examined. Recently, it has been shown that the oscillation used with dynamic indentation techniques alters the measured hardness value of ductile metallic materials, especially at depths less than 200 nm. The alteration in the hardness is due to the added energy associated with the oscillation which assists dislocation nucleation. Atomistic simulations on nickel thin films agree with experiments that more dislocations are nucleated during dynamic indents than with quasi-static indents. Through the analysis of quasi-static and dynamic indents made into nickel single crystals and thin films, a theory to describe this phenomenon is presented. This is coined the Nano-Jackhammer effect, a combination of dislocation nucleation and strain rate sensitivity caused by indentation with a superimposed dynamic oscillation.     

Measurements of absolute γ-ray intensities in the decays of very neutron rich isotopes of Cd and In

The half lives and the γ-ray branching ratios of neutron rich Cd and In isotopes have been investigated by simultaneous measurements of β- and γ-ray spectra. The results presented contain information on 21 different β-decaying isotopes or isomers of Cd and In in the mass region A=123–129. Four previously unknown or little known isotopes of Cd are reliably characterized for the first time.