Noise Analysis of Duplicated Data on Microarrays Using Mixture Distribution Modeling

We propose a technique for estimating gene expression values for duplicated data on cDNA microarrays. In the scatter plots, the distribution is constructed from a mixture of normal two-dimensional distributions, which represent fluctuations in gene expression values due to noise. An expectation-maximization (EM) algorithm is used for estimating the modeling parameters. The probability that duplicated data is shifted by noise is calculated using Bayesian estimation. Six data sets of rice cDNA microarray assays were used to test the proposed technique. Genes in the data sets were subjected to clustering based on probability of true value. Clustering successfully identified candidate genes regulated by circadian rhythms in rice.     

Competitive thermal ene reaction and Diels-Alder reactions of 2-[N-(alk-2-enyl)benzylamino]-3-vinylpyrido[1,2-a]pyrimidin-4(4H)-ones

Thermal reaction of 2-[N-(alk-2-enyl)benzylamino]-3-(2-substituted and 2,2-disubstituted)vinylpyrido[1,2-a]pyrimidin-4(4H)-ones gave azepine, the desired ene products, and/or pyran derivatives. The formation of the latter was responsible for the [4+2] cycloaddition reaction between the α,β-unsaturated ester carbonyl moiety as a diene part and the alkenylamino moiety as an ene one. The reaction features depended upon the kinds of substituents both on the vinyl and alkenyl counterparts; strongly electron-withdrawing substituents on the vinyl moiety or an electron-donating substituent on the alkenyl one changed the reaction feature from the ene reaction to the hetero Diels-Alder reaction.     

Thermal decomposition kinetic of reactive solids based on isothermal calorimetry measurements

An isothermal method was applied to measure the thermal decomposition of reactive solids in a sensitive heat flux reaction calorimeter, C80. This technique experimentally clarified the decomposition mechanisms of unstable substances based on the shapes of the heat flow curves, from which autocatalysis, first-order reaction or pseudo-autocatalytic reaction could be recognized. Kinetic parameters were derived from the measured data.     

Computational chemical analysis of the retention of acidic drugs on a pentyl-bonded silica gel in reversed-phase liquid chromatography

A fast method to obtain a quantitative structure-retention relationship is required in chromatography for the rapid optimization of chromatographic separation conditions. Chromatographic data of acidic drugs are analyzed by a computational chemical method to simulate chromatographic simulation. The direct interaction between a model phase and a drug is calculated as an energy value using the molecular mechanics calculation of CAChe. Computational chemistry using a model adsorbent is a new method for quantitative analysis of retention in reversed-phase liquid chromatography. The correlation coefficient is 0.878 (n = 19) between the retention factors of acidic drugs and interaction energy values of the final structure (DeltaFS) between an acidic drug and model pentyl-bonded phase.     

[2.2](2,6)Biphenylenophane and [2](2,6)Biphenyleno[2](2,6)naphthalenophane

Two cyclophanes, [2.2](2,6)biphenylenophane and [2](2,6)biphenyleno[2](2,6)naphthalenophane, were prepared.     

Photometric detection of cyclodextrins in liquid chromatography by using iodine generated electrochemically in-situ

A method has been developed for photometric detection of cyclodextrins (CD) in liquid chromatography using iodine (I₂) generated electrochemically in-situ. Iodide ion in the mobile phase was electrochemically oxidized to I₂ which was subsequently reacted with I^–, in an electrochemical flow cell, forming I₃^–. The absorbance of I₃^– was found to be greatly enhanced when CD were present in the mobile phase. The absorbance enhancement was caused by the change in the mole fraction of I₃^–, because of the inclusion reaction of I₃^– with CD. On the basis of this phenomenon, CD were detected by means of a photodiode-array UV–visible detector positioned downstream of the electrochemical flow cell. The signals were found to be linearly dependent on CD concentration. Because the formation constants of I₃^– with CD decrease in the order -CD>-CD>-CD, -CD was most detectable by the method. Detection limits were 1.0 mol L^–1 for -CD, 65 mol L^–1 for monoG1--CD, 100 mol L^–1 for -CD, and 200 mol L^–1 for -CD.     

New design of a radio-frequency plasma torch

A numerical model has been developed for predicting the two-dimensional flow and temperature fields in a radio-frequency (rf) plasma torch. The method employed here is based on Boulos' model with the exception of the boundary conditions for the electric and magnetic field equations. Calculations have been made for the confirmation of a new sample injection method, which is capable of completely evaporating refractory materials at high feeding rates without interfering with the stability of the plasma. In the newly designed torch, the reagent is radially injected into the hottest part of the plasma through quartz capillary tubes set symmetrically between an inductor coil. Experimental investigations have also been performed for verifying the proper function of the design. These results provide evidence that our radial injection method developed here is more effective in practical processing than the conventional axial injection methods.     

Microwave spectrum and the structure of benzoyl chloride

The microwave spectrum of benzoyl chloride was observed in the frequency range 12–18.6 GHz. Rotational constants have been obtained for the ground vibrational state, the first three excited torsional states of the COCl group, and one of the out-of-plane bending states. The residual inertial defect obtained from the ground and the torsional excited states indicates that the equilibrium conformation is planar. Ab initio MO calculations (STO-3G) showed the potential energy curve as a function of the COCl torsional angle to be rather flat around zero degrees.     

Mesogenicity of Organophosphazenes: The Effect of Phosphazene Rings and Side Groups on the Phase Transition

Cyclotriphosphazene and cyclotetraphosphazene derivatives with mesogenic 4-N-(4-alkoxyphenyl)iminomethyl)phenoxy and 4-(4'-alkoxy)biphenoxy moieties were synthesized. Schiff base moiety has higher mesomorphic stability than that in biphenyl moiety both in cyclotriphosphazene and cyclotetraphosphazene. Cyclotriphosphazenes possess higher thermal stability in the mesomorphic phase than the cyclotetraphosphazenes, suggesting the difference in the molecular structure.