The molecular structures of gaseous cyclopentene oxide,cyclohexene oxide and cycloheptene oxide as determined by electron diffraction

The molecular structures of gaseous cyclopentene oxide, cyclohexene oxide and cycloheptene oxide are investigated by electron diffraction. The boat conformation of cyclopentene oxide is confirmed, while a half-chair conformer is determined for cyclohexene oxide. Cycloheptene oxide is found to exist in a 66(2):34(2) conformational mixture of two chair forms.     

Simple fluorescent pyrimidine analogues detect the presence of DNA abasic sites

A family of simple pyrimidine analogues has been synthesized, and their photophysical properties have been investigated. The most responsive of the family was incorporated in DNA. This isosteric fluorescent DNA analogue monitors denaturation of a DNA duplex via fluorescence and positively detects the presence of abasic sites in DNA duplexes.     

Donor/acceptor interactions in systematically modified Ru(II)-Os(II) oligonucleotides

Donor/acceptor (D/A) interactions are studied in a series of doubly modified 19-mer DNA duplexes. An ethynyl-linked Ru(II) donor nucleoside is maintained at the 5' terminus of each duplex, while an ethynyl-linked Os(II) nucleoside, placed on the complementary strands, is systematically moved toward the other terminus in three base pair increments. The steady-state Ru(II)-based luminescence quenching decreases from 90% at the shortest separation of 16 A (3 base pairs) to approximately 11% at the largest separation of 61 A (18 base pairs). Time-resolved experiments show a similar trend for the Ru(II) excited-state lifetime, and the decrease in the averaged excited-state lifetime for each duplex is linearly correlated with the fraction quenched obtained by steady-state measurements. Analysis according to the F?rster dipole-dipole energy transfer mechanism shows a reasonable agreement. Deviation from idealized behavior is primarily attributed to uncertainty in the orientation factor, kappa(2). Analyzing D/A interactions in an analogous series of doubly modified oligonucleotides, where the ethynyl-linked Ru(II) center is replaced with a saturated two-carbon linked complex, yields an excellent correlation with the F?rster mechanism. As this simple change partially relaxes the rigid geometry of the donor chromophore, these results suggest that the deviation from idealized F?rster behavior observed for the duplexes containing the rigidly held Ru(II) center originates, at least partially, from ambiguities in the orientation factor. Surprisingly, analyzing both quenching data sets according to the Dexter mechanism also shows an excellent correlation. Although this can be interpreted as strong evidence for a Dexter triplet energy transfer mechanism, it does not imply that this electron exchange mechanism is operative in these D/A duplexes. Rather, it suggests that systems that transfer energy via the F?rster mechanism can under certain circumstances exhibit Dexter-like "behavior", thus illustrating the danger of imposing a single physical model to describe D/A interactions in such complex systems. While we conclude that the F?rster dipole-dipole energy transfer mechanism is the dominant pathway for D/A interactions in these modified oligonucleotides, a minor contribution from the Dexter electron exchange mechanism at short distances is likely. This complex behavior distinguishes DNA-bridged Ru(II)/Os(II) dyads from their corresponding low molecular-weight and covalently attached counterparts.     

Transannular Diels-Alder studies on the asymmetric total synthesis of chatancin: the pyranophane approach

[reaction: see text] A pathway is proposed for the biosynthesis of (+)-chatancin and (+)-sarcophytin linking these tetracycles to cembranoids by a pyranophane transannular Diels-Alder reaction. Preliminary synthetic results in this direction to reach macrocyclic dienedione 28 from farnesol are reported. Major synthetic steps include a Prins reaction, two enantioselective hydrogenations, and a macrocyclization via a beta-ketosulfoxide Michael-addition on an enone.     

Controlled Growth of SrxBa1−xNb2O6 Hopper- and Cube-Shaped Nanostructures by Hydrothermal Synthesis

Controlling the shape and size of nanostructured materials has been a topic of interest in the field of material science for decades. In this work, the ferroelectric material Sr_xBa_1−xNb₂O₆ (x=0.32–0.82, SBN) was prepared by hydrothermal synthesis, and the morphology is controllably changed from cube-shaped to hollow-ended structures based on a fundamental understanding of the precursor chemistry. Synchrotron X-ray total scattering and PDF analysis was used to reveal the structure of the Nb-acid precursor, showing Lindqvist-like motifs. The changing growth mechanism, from layer-by-layer growth forming cubes to hopper-growth giving hollow-ended structures, is attributed to differences in supersaturation. Transmission electron microscopy revealed an inhomogeneous composition along the length of the hollow-ended particles, which is explained by preferential formation of the high entropy composition, SBN33, at the initial stages of particle nucleation and growth.     

Emissive Synthetic Cofactors: Enzymatic Interconversions of tzA Analogues of ATP,NAD+, NADH,NADP+, and NADPH

A series of enzymatic transformations, which generate visibly emissive isofunctional cofactors based on an isothiazolo[4,3‐d]pyrimidine analogue of adenosine ( ^tz A ), was developed. Nicotinamide adenylyl transferase condenses nicotinamide mononucleotide and ^tz ATP to yield N^tzAD⁺ , which can be enzymatically phosphorylated by NAD⁺ kinase and ATP or ^tz ATP to the corresponding N^tzADP⁺ . The latter can be engaged in NADP‐specific coupled enzymatic transformations involving conversion to N^tzADPH by glucose‐6‐phosphate dehydrogenase and reoxidation to N^tzADP⁺ by glutathione reductase. The N^tzADP⁺ / N^tzADPH cycle can be monitored in real time by fluorescence spectroscopy.