Application of capillary electrophoresis-mass spectrometry to synthetic in vitro glycolysis studies

We propose an approach designed to reconstitute a metabolic pathway composed of multistep biochemical reactions, rather than to dissect the individual reactions that make up the pathway. A synthetic in vitro glycolysis was reconstructed from ten purified Escherichia coli (E. coli) enzymes to obtain a better understanding of the regulation of sequential enzymatic reactions. The key to the success of this approach is the ability to perform direct and simultaneous determination of the diverse metabolic intermediates in the pathway by capillary electrophoresis-mass spectrometry. We observed that the pathway is regulated by a delicate balance between the changing metabolite concentrations and behaves like a natural biological oscillating network that has hitherto not been reported for E. coli glycolysis. The end-product, pyruvate, was periodically synthesized from glucose at an overall efficiency of 30%, corresponding to an average of 90% conversion efficiency for each of the ten steps involved. This approach is likely useful for the synthesis of natural products requiring complex sequential biocatalytic reactions.     

Digital Holographic Particle Tracking Velocimetry for 3-D Transient Flow around an Obstacle in a Narrow Channel

Digital holographic particle tracking velocimetry (PTV) is developed by single high-speed camera and single double pulsed laser with high frequency pulses. This system can directly capture 1000 hologram fringe images for 1 second through a camera computer memory. The 3-D particle location is made of the reconstruction by using a computer hologram algorithm in a personal computer. This system can successfully be applied to instantaneous 3-D velocity measurement in the water flow with a square obstacle, and can obtain an average of 300 instantaneous velocity vectors.     

Binding modes in metal ion complexes of quinones and semiquinone radical anions: electron-transfer reactivity.

9,10-Phenanthrenequinone (PQ) and 1,10-phenanthroline-5,6-dione (PTQ) form 1:1 and 2:1 complexes with metal ions (M (n+)=Sc (3+), Y (3+), Mg (2+), and Ca (2+)) in acetonitrile (MeCN), respectively. The binding constants of PQ--M (n+) complexes vary depending on either the Lewis acidity or ion radius of metal ions. The one-electron reduced species (PTQ(-)) forms 1:1 complexes with M (n+), and PQ(-) also forms 1:1 complexes with Sc(3+), Mg(2+), and Ca(2+), whereas PQ(-) forms 1:2 complexes with Y(3+) and La(3+), as indicated by electron spin resonance (ESR) measurements. On the other hand, semiquinone radical anions (Q(-) and NQ(-)) derived from p-benzoquinone (Q) and 1,4-naphthoquinone (NQ) form Sc(3+)-bridged pi-dimer radical anion complexes, Q(-)--(Sc(3+))(n)--Q and NQ(-)--(Sc(3+))(n)-NQ (n=2 and 3), respectively. The one-electron reduction potentials of quinones (PQ, PTQ, and Q) are largely positively shifted in the presence of M (n+). The rate constant of electron transfer from CoTPP (TPP(2-)=dianion of tetraphenylporphyrin) to PQ increases with increasing the concentration of Sc(3+) to reach a constant value, when all PQ molecules form the 1:1 complex with Sc(3+). Rates of electron transfer from 10,10'-dimethyl-9,9'-biacridine [(AcrH)(2)] to PTQ are also accelerated significantly by the presence of Sc(3+), Y(3+), and Mg(2+), exhibiting a first-order dependence with respect to concentrations of metal ions. In contrast to the case of o-quinones, unusually high kinetic orders are observed for rates of Sc(3+)-promoted electron transfer from tris(2-phenylpyridine)iridium(III) [Ir(ppy)(3)] to p-quinones (Q): second-order dependence on concentration of Q, and second- and third-order dependence on concentration of Sc(3+) due to formation of highly ordered radical anion complexes, Q()--(Sc(3+))(n)--Q (n=2 and 3).     

Squid chitin as a potential alternative chitin source: Deacetylation behavior and characteristic properties

β-Chitin was isolated from squid pens, and the characteristic chemical and physical properties were elucidated in comparison with those of shrimp chitin, α-chitin. Deacetylation behavior of the squid chitin was first studied to look into the reactivity of β-chitin and also to establish an efficient procedure for preparing squid chitosan. The squid chitin proved to show much higher reactivity in alkaline deacetylation than shrimp chitin. Although it was deacetylated quite easily, the product assumed a dark brown color under the ordinary reaction conditions for shrimp chitosan. Squid chitosan was successfully prepared by repeated alkaline treatments under mild conditions, particularly with high concentration alkali at low temperatures, without appreciable discoloration. The structural characteristics of the squid chitin were discussed on the basis of the IR and x-ray analysis data. The crystalline structure of squid chitin was destroyed easily on deacetylation compared to that of shrimp chitin, and moreover, the resulting squid chitosan was amorphous unlike crystalline shrimp chitosan. The squid chitin was characterized by the remarkable affinity for organic solvents and water. Squid chitin and chitosan also showed much higher hygroscopicity and retention of the absorbed water than shrimp chitin and chitosan and are considered to be useful as highly hydrophilic materials. © 1993 John Wiley & Sons, Inc.     

Electron-transfer oxidation properties of DNA bases and DNA oligomers

Kinetics for the thermal and photoinduced electron-transfer oxidation of a series of DNA bases with various oxidants having the known one-electron reduction potentials (E(red)) in an aqueous solution at 298 K were examined, and the resulting electron-transfer rate constants (k(et)) were evaluated in light of the free energy relationship of electron transfer to determine the one-electron oxidation potentials (E(ox)) of DNA bases and the intrinsic barrier of the electron transfer. Although the E(ox) value of GMP at pH 7 is the lowest (1.07 V vs SCE) among the four DNA bases, the highest E(ox) value (CMP) is only 0.19 V higher than that of GMP. The selective oxidation of GMP in the thermal electron-transfer oxidation of GMP results from a significant decrease in the pH dependent oxidation potential due to the deprotonation of GMP*+. The one-electron reduced species of the photosensitizer produced by photoinduced electron transfer are observed as the transient absorption spectra when the free energy change of electron transfer is negative. The rate constants of electron-transfer oxidation of the guanine moieties in DNA oligomers with Fe(bpy)3(3+) and Ru(bpy)3(3+) were also determined using DNA oligomers containing different guanine (G) sequences from 1 to 10 G. The rate constants of electron-transfer oxidation of the guanine moieties in single- and double-stranded DNA oligomers with Fe(bpy)3(2+) and Ru(bpy)3(3+) are dependent on the number of sequential guanine molecules as well as on pH.     

Mechanisms of hydrogen-, oxygen-, and electron-transfer reactions of cumylperoxyl radical

Rates of hydrogen-transfer reactions from a series of para-substituted N,N-dimethylanilines to cumylperoxyl radical and oxygen-transfer reactions from cumylperoxyl radical to a series of sulfides and phosphines have been determined in propionitrile (EtCN) and pentane at low temperatures by use of ESR. The observed rate constants exhibit first-order and second-order dependence with respect to concentrations of N,N-dimethylanilines. This indicates that the hydrogen- and oxygen-transfer reactions proceed via 1:1 charge-transfer (CT) complexes formed between the substrates and cumylperoxyl radical. The primary kinetic isotope effects are determined by comparing the rates of N,N-dimethylanilines and the corresponding N,N-bis(trideuteriomethyl)anilines. The isotope effect profiles are quite different from those reported for the P-450 model oxidation of the same series of substrates. Rates of electron-transfer reactions from ferrocene derivatives to cumylperoxyl radical have also been determined by use of ESR. The catalytic effects of Sc(OTf)(3) (OTf = triflate) on the electron-transfer reactions are compared with those of Sc(OTf)(3) on the hydrogen- and oxygen-transfer reactions. Such comparison provides strong evidence that the hydrogen- and oxygen- transfer reactions of cumylperoxyl radical proceed via a one-step hydrogen atom and oxygen atom transfer rather than via an electron transfer from substrates to cumylperoxyl radical.     

Synthesis of α,β-unsaturated ketone from α-iodo ketone using photoirradiation

Irradiation of α-iodo ketone in hexane under a nitrogen atmosphere with a high-pressure mercury lamp (λ>300nm) at room temperature afforded the corresponding α,β-unsaturated ketones in good yield. This reaction affords a new, clean and convenient synthetic method for the α,β-unsaturated ketone.     

Analysis of crystallization behavior and crystal modifications of poly(butylene‐2,6‐naphthalene dicarboxylate)

Information on the crystalline structure and the properties of poly(butylene‐2,6‐naphthalene dicarboxylate) (PBN) has not been well reported until now, but it is known that there are two different crystal modifications in PBN, as follows: one is formed in isotropic samples by annealing (α form); another appears by annealing with tension (β form). The relation between the crystal modifications and the kinetics of isothermal crystallization for PBN was investigated using in‐situ Fourier transform infrared spectroscopy (FTIR) and wide‐angle X‐ray diffraction (WAXD). The melting behavior of each crystalline form was also studied by means of FTIR and differential scanning calorimetry (DSC) measurements. From the analysis of the melt‐crystallized PBN specimens, the two crystalline forms coexisted in the isotropic samples melt‐crystallized at 230°C, but only the α crystal modification was observed in the films annealed at lower temperatures. In addition, it was revealed that, at 230°C, the β modification was formed only in the primary crystallization process. © 1999 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 37: 561–574, 1999