A semisynthetic Eph receptor tyrosine kinase provides insight into ligand-induced kinase activation

We have developed a methodology for generating milligram amounts of functional Eph tyrosine kinase receptor using the protein engineering approach of expressed protein ligation. Stimulation with ligand induces efficient autophosphorylation of the semisynthetic Eph construct. The in vitro phosphorylation of key Eph tyrosine residues upon ligand-induced activation was monitored via time-resolved, quantitative phosphoproteomics, suggesting a precise and unique order of phosphorylation of the Eph tyrosines in the kinase activation process. To our knowledge, this work represents the first reported semisynthesis of a receptor tyrosine kinase and provides a potentially general method for producing single-pass membrane proteins for structural and biochemical characterization.     

Effect of nitrogen adsorption on the mid-infrared spectrum of water clusters

Experimental Fourier-transform infrared spectra and DFT calculated infrared spectra are compared to investigate the effect of adsorbed nitrogen on the OH-stretch band complex of water clusters. Using a collisional cooling experiment, pure as well as partially and completely N(2)-covered water clusters consisting of 20-200 water molecules have been generated in thermal equilibrium in the aerosol phase within the temperature range of 5-80 K. Computational IR-spectra simulations have been performed for discrete pure and N(2)-covered water clusters including 10, 15, 20, and 30 water molecules. The adsorbed N(2) molecules especially affect the three-coordinated water molecules at the cluster surface which could be observed as a blue shift of the companion O-H band at 2900 cm(-1) and a red shift of the dangling O-H band at 3700 cm(-1) by about 20 cm(-1) in both cases. The most striking effect of the N(2) adsorbate is an intensity increase of the dangling O-H band by a factor of 3-5. Furthermore, the onset temperature of nitrogen adsorption at the water cluster surface was experimentally found to be roughly 30 K for cluster sizes of about 100 water molecules. Experimental and computational results are in good agreement. The presented results are based on and support the work of V. Buch, J. P. Devlin, and co-workers (e.g., J. Phys. Chem. B, 1997; J. Phys. Chem. A, 2003; Int. Rev. Phys. Chem., 2004).     

Unraveling the similarity of the photoabsorption of deprotonated p-coumaric acid in the gas phase and within the photoactive yellow protein

Using advanced QM/MM methods, the surprisingly negligible shift of the lowest-lying bright electronic excitation of the deprotonated p-coumaric acid (pCA(-)) within the photoactive yellow protein (PYP) is shown to stem from a subtle balance between hypsochromic and bathochromic effects. More specifically, it is found that the change in the excitation energy as a consequence of the disruption of the planarity of pCA(-) inside PYP is nearly canceled out by the shift induced by the intermolecular interactions of the chromophore and the protein as a whole. These results provide important insights about the primary absorption and the tuning of the chromophore by the protein environment in PYP.     

Theoretical investigation of the apparently irregular behavior of pt-pt nuclear spin-spin coupling constants

One-bond Pt-Pt nuclear spin-spin coupling constants J(Pt-Pt) for closely related dinuclear Pt complexes can differ by an order of magnitude without any obvious correlation with Pt-Pt distances. As representative examples, the spin-spin couplings of the dinuclear Pt(I) complexes [Pt(2)(CO)(6)](2+) (1) and [Pt(2)(CO)(2)Cl(4)](2-) (2) have been computationally studied with a recently developed relativistic density functional method. The experimental values are (1)J((195)Pt-(195)Pt) = 5250 Hz for 2 but 551 Hz for 1. Many other examples are known in the literature. The experimental trends are well reproduced by the computations and can be explained based on the nature of the ligands that are coordinated to the Pt-Pt fragment. The difference for J(Pt-Pt) of an order of magnitude is caused by a sensitive interplay between the influence of different ligands on the Pt-Pt bond, and relativistic effects on metal-metal and metal-ligand bonds as well as on "atomic orbital contributions" to the nuclear spin-spin coupling constants. The results can be intuitively rationalized with the help of a simple qualitative molecular orbital diagram.     

Unexpected but Easy Synthesis of a Dihydrophosphadiazaazulene

Abstract

The title compound is the main product of the 2:1 reaction of DMAD with diazaphosphinines. The supposed mechanisms with intermediates and related products will be presented.     

Bottleable Neutral Analogues of [B2H5]− as Versatile and Strongly Binding η2 Donor Ligands

Herein we report the discovery that two bottleable, neutral, base‐stabilized diborane(5) compounds are able to bind strongly to a number of copper(I) complexes exclusively through their B?B bond. The resulting complexes represent the first known complexes containing unsupported, neutral σ_B?B diborane ligands. Single‐crystal X‐ray analyses of these complexes show that the X?Cu moiety (X=Cl, OTf, C₆F₅) lies opposite the bridging hydrogen atom of the diborane and is near perpendicular to the B?B bond, interacting almost equally with both boron atoms and causing a B?B bond elongation. DFT studies show that σ donation from and π backdonation to the pseudo‐π‐like B?B bond account for their formation. Astoundingly, these copper σ_B?B complexes are inert to ligand exchange with pyridine under either heating or photoirradiation.     

Estimation of second order rate constants using chemometric methods with kinetic constraints

Several methods are described for determining rate constants for second order reactions of the form U + V --> W using chemometrics and hard modelling to analyse UV absorption spectroscopic data, where all species absorb with comparable concentrations and extinctions. An interesting feature of this type of reaction is that the number of steps in the reaction is less than the number of absorbing species, resulting in a rank-deficient response matrix. This can cause problems when using some of the methods described in the literature. The approaches discussed in the paper depend, in part, on what knowledge is available about the system, including the spectra of the reactants and product, the initial concentrations and the exact kinetics. Sometimes some of this information may not be available or may be hard to estimate. Five groups of methods are discussed, namely use of multiple linear regression to obtain concentration profiles and fit kinetics information, rank augmentation using multiple batch runs, difference spectra based approaches, mixed spectral approaches which treat the reaction as two independent pseudospecies, and principal components regression. Two datasets are simulated, one where the spectra are quite different and the other where the spectrum of one reactant and the product share a high degree of overlap. Three sources of error are considered, namely sampling error, instrumental noise and errors in initial concentrations. The relative merits of each method are discussed.     

Studies on the Anode/Electrolyte Interfacein Lithium Ion Batteries

Summary.  Rechargeable lithium ion cells operate at voltages of 3.5–4.5 V, which is far beyond the thermodynamic stability window of the battery electrolyte. Strong electrolyte reduction and anode corrosion has to be anticipated, leading to irreversible loss of electroactive material and electrolyte and thus strongly deteriorating cell performance. To minimize these reactions, anode and electrolyte components have to be combined that induce the electrolyte reduction products to form an effectively protecting film at the anode/electrolyte interface, which hinders further electrolyte decomposition reactions, but acts as membrane for the lithium cations, i.e. behaving as a solid electrolyte interphase (SEI). This paper focuses on important aspects of the SEI. By using key examples, the effects of film forming electrolyte additives and the change of the active anode material from carbons to lithium storage alloys are highlighted. Received May 30, 2000. Accepted June 14, 2000     

Ambient Electrosynthesis of Ammonia: Electrode Porosity and Composition Engineering

Ammonia, a key precursor for fertilizer production, convenient hydrogen carrier, and emerging clean fuel, plays a pivotal role in sustaining life on Earth. Currently, the main route for NH₃ synthesis is by the heterogeneous catalytic Haber–Bosch process (N₂+3 H₂→2 NH₃), which proceeds under extreme conditions of temperature and pressure with a very large carbon footprint. Herein we report that a pristine nitrogen‐doped nanoporous graphitic carbon membrane (NCM) can electrochemically convert N₂ into NH₃ in an acidic aqueous solution under ambient conditions. The Faradaic efficiency and rate of production of NH₃ on the NCM electrode reach 5.2 % and 0.08 g m^?2 h^?1, respectively. Functionalization of the NCM with Au nanoparticles dramatically enhances these performance metrics to 22 % and 0.36 g m^?2 h^?1, respectively. As this system offers the potential to be scaled to industrial levels it is highly likely that it might displace the century‐old Haber–Bosch process.