Flow injection microbial trichloroethylene sensor

A flow type microbial biosensor for direct measurement of trichloroethylene (TCE) was developed. The unique features of this novel microbial sensor were the use of the TCE degrading bacterium Pseudomonas aeruginosa JI104, the electrical detection of the chloride ion released by microbial degradation, and flow cell made of glass. Glass cell was used in order to suppress adsorption of TCE and made a closed reaction cell. Vaporization of TCE during the measurement was prevented using closed flow cell. The performance of the sensor was evaluated from following aspects; such as pH of the carrier solution, amount of the immobilized microbe, flow rate and injection volume. The sensor signals were linearly proportional to the concentration of TCE in the range from 0.03 to 2 mgl(-1), which is suitable for the determination of suspected samples to be drinkable water or not. The sensor performance was checked on the real sample, and this system showed good response in ground water, indicating its applicability for the on line monitoring at TCE contaminated areas or hazardous sites.     

Functional evaluation of iron oxypyriporphyrin in protein heme pocket

The iron complex of oxypyriporphyrin, a porphyrinoid containing a keto-substituted pyridine, was coupled with apomyoglobin. The reconstituted ferric myoglobin was found to be five-coordinate without iron-bound water molecules. The anionic ligands such as CN (-) and N 3 (-) bound the myoglobin with high affinities, while neutral imidazole did not. The IR observation indicated that the azide complex was pure high-spin, although the corresponding native protein was in the spin-state equilibrium. The reduced myoglobin was five-coordinate but exhibited no measurable affinity for O 2. The affinity for CO was lowered down to 1/2400 as compared with native myoglobin. These anomalies were ascribed to the deformation in the iron coordination core after the replacement of one of the four pyrroles with a larger pyridine ring. The ligand binding analyses for the ferric and ferrous myoglobin suggest that the proximal histidine pulls the iron atom from the deformed core to reduce the interaction between the iron and exogenous ligands. Similarity of the reconstituted myoglobin with guanylate cyclase, a NO-responsive signaling hemoprotein, was pointed out.     

Ruthenium complex-catalyzed allylic alkylation of carbonucleophiles with allylic carbonates

Allylic carbonates except for allyl methyl carbonate reacted with carbonucleophiles such as ethyl acetoacetate in the presence of a catalytic amount of Ru(cod)(cot) [cod = cycloocta-1,5-diene, COT = cycloocta-1,3,5-triene] in N-methylpiperidine at 80°C to give the corresponding monoallylated carbonucleophiles in high yields with high regioselectivity. The regioselectivity was quite different from that in the palladium-catalyzed reactions. The allylation of carbonucleophiles using allyl methyl carbonate selectively gave the diallylated carbonucleophiles in high yields.     

Benchmark results in vector atmospheric radiative transfer

In this paper seven vector radiative transfer codes are inter-compared for the case of underlying black surface. They include three techniques based on the discrete ordinate method (DOM), two Monte-Carlo methods, the successive orders scattering method, and a modified doubling-adding technique. It was found that all codes give very similar results. Therefore, we were able to produce benchmark results for the Stokes parameters both for reflected and transmitted light in the cases of molecular, aerosol and cloudy multiply scattering media. It was assumed that the single scattering albedo is equal to one. Benchmark results have been provided by several studies before, including Coulson et al. [22], Garcia and Siewert [7], [8], Wauben and Hovenier [10], and Natraj et al. [11] among others. However, the case of the elongated phase functions such as for a cloud and with a high angular resolution is presented here for the first time. Also in difference with other studies, we make inter-comparisons using several codes for the same input dataset, which enables us to quantify the corresponding errors more accurately.     

Relationship between the bubble temperature and main oxidant created inside an air bubble under ultrasound

Numerical simulations of nonequilibrium chemical reactions in a pulsating air bubble have been performed for various ultrasonic frequencies (20 kHz, 100 kHz, 300 kHz, and 1 MHz) and pressure amplitudes (up to 10 bars). The results of the numerical simulations have indicated that the main oxidant is OH radical inside a nearly vaporous or vaporous bubble which is defined as a bubble with higher molar fraction of water vapor than 0.5 at the end of the bubble collapse. Inside a gaseous bubble which is defined as a bubble with much lower vapor fraction than 0.5, the main oxidant is H2O2 when the bubble temperature at the end of the bubble collapse is in the range of 4000-6500 K and O atom when it is above 6500 K. From the interior of a gaseous bubble, an appreciable amount of OH radical also dissolves into the liquid. When the bubble temperature at the end of the bubble collapse is higher than 7000 K, oxidants are strongly consumed inside a bubble by oxidizing nitrogen and the main chemical products inside a bubble are HNO2, NO, and HNO3.     

Genetic engineering of the heme pocket in human serum albumin: modulation of O2 binding of iron protoporphyrin IX by variation of distal amino acids

Complexing an iron protoporphyrin IX into a genetically engineered heme pocket of recombinant human serum albumin (rHSA) generates an artificial hemoprotein, which can bind O2 in much the same way as hemoglobin (Hb). We previously demonstrated a pair of mutations that are required to enable the prosthetic heme group to bind O2 reversibly: (i) Ile-142-->His, which is axially coordinated to the central Fe2+ ion of the heme, and (ii) Tyr-161-->Phe or Leu, which makes the sixth coordinate position available for ligand interactions [I142H/Y161F (HF) or I142H/Y161L (HL)]. Here we describe additional new mutations designed to manipulate the architecture of the heme pocket in rHSA-heme complexes by specifically altering distal amino acids. We show that introduction of a third mutation on the distal side of the heme (at position Leu-185, Leu-182, or Arg-186) can modulate the O2 binding equilibrium. The coordination structures and ligand (O2 and CO) binding properties of nine rHSA(triple mutant)-heme complexes have been physicochemically and kinetically characterized. Several substitutions were severely detrimental to O2 binding: for example, Gln-185, His-185, and His-182 all generated a weak six-coordinate heme, while the rHSA(HF/R186H)-heme complex possessed a typical bis-histidyl hemochrome that was immediately autoxidized by O2. In marked contrast, HSA(HL/L185N)-heme showed very high O2 binding affinity (P1/2O2 1 Torr, 22 degrees C), which is 18-fold greater than that of the original double mutant rHSA(HL)-heme and very close to the affinities exhibited by myoglobin and the high-affinity form of Hb. Introduction of Asn at position 185 enhances O2 binding primarily by reducing the O2 dissociation rate constant. Replacement of polar Arg-186 with Leu or Phe increased the hydrophobicity of the distal environment, yielded a complex with reduced O2 binding affinity (P1/2O2 9-10 Torr, 22 degrees C), which nevertheless is almost the same as that of human red blood cells and therefore better tuned to a role in O2 transport.     

Forcings with the countable chain condition and the covering number of the Marczewski ideal

We prove that the covering number of the Marczewski ideal is equal to ₁ in the extension with the iteration of Hechler forcing.