π–π Stacking Interaction in an Oxidized CuII–Salen Complex with a Side-Chain Indole Ring: An Approach to the Function of the Tryptophan in the Active Site of Galactose Oxidase

In order to gain new insights into the effect of the π–π stacking interaction of the indole ring with the Cu^II–phenoxyl radical as seen in the active form of galactose oxidase, we have prepared a Cu^II complex of a methoxy-substituted salen-type ligand, containing a pendent indole ring on the dinitrogen chelate backbone, and characterized its one-electron-oxidized forms. The X-ray crystal structures of the oxidized Cu^II complex exhibited the π–π stacking interaction of the indole ring mainly with one of the two phenolate moieties. The phenolate moiety in close contact with the indole moiety showed the characteristic phenoxyl radical structural features, indicating that the indole ring favors the π–π stacking interaction with the phenoxyl radical. The UV/Vis/NIR spectra of the oxidized Cu^II complex with the pendent indole ring was significantly different from those of the complex without the side-chain indole ring, and the absorption and CD spectra exhibited a solvent dependence, which is in line with the phenoxyl radical–indole stacking interaction in solution. The other physicochemical results and theoretical calculations strongly support that the indole ring, as an electron donor, stabilizes the phenoxyl radical by the π–π stacking interaction.     

A novel mediator-polymer-modified anode for microbial fuel cells

A high-performance anode system based on a combination of mediator-polymer-modified graphite felt and bacteria capable of reducing extracellular materials shows significant potential for practical use in microbial fuel cells (MFCs).     

Preparation of highly monodisperse fluorescent polymer particles by miniemulsion polymerization of styrene with a polymerizable surfactant

Miniemulsion polymerization of styrene (St) in the presence of a hydrophobe (hexadecane:HD) using a cationic polymerizable surfactant (N,N-dimethyl-N-n-dodecyl-N-2-methacryloyloxyethylammonium bromide:C(12)Br) and a cationic initiator (2,2'-azobis(2-amidinopropane) dihydrochloride:V50), called St/C(12)Br/V50 hereafter, proceeded efficiently compared with that using sodium dodecyl sulfate (SDS) and potassium persulfate (KPS), i.e., St/SDS/KPS, providing monodisperse polystyrene latex particles with a narrower particle size distribution. In St/C(12)Br/AIBN, where an oil-soluble initiator, i.e., 2,2'-azobisisobutyronitrile (AIBN), was used in place of V50, little changes in polymerization kinetics or in particle size distribution were observed, while a significant drop in polymerization rate and a broad particle size distribution were observed with St/SDS/AIBN. A polymerizable pyrene derivative (1-pyrenylmethyl methacrylate: PyMMA) was quantitatively incorporated into monodisperse latex particles in St/PyMMA/C(12)Br/V50 compared to pyrene (Py) in St/Py/C(12)Br/V50. Contrary to our expectation, however, increased excimer emission was observed with St/PyMMA/C(12)Br/V50 particles, indicating less evenly distributed pyrene chromophores in the particles. The fluorescence lifetime of pyrene chromophores in St/Py/C(12)Br/V50 particles was determined to be 286 ns, which was 17 times longer than that of pyrene in THF solution.     

Equilibrium conditions for clathrate hydrates formed from methane and aqueous propanol solutions

Equilibrium conditions for clathrate hydrates formed from methane and different concentrations of 1-propanol or 2-propanol aqueous solutions were experimentally determined at temperatures of 274.0–287.1 K and pressures up to 11.0 MPa. Each propanol has an inhibiting and/or promoting effect on hydrate formation depending on the propanol concentration. A structural transition from a structure I to a different hydrate structure occurred at concentrations between 3 and 5 mass% for 1-propanol and between 2 and 3 mass% for 2-propanol.     

Directed aggregation and fusion of lipid vesicles induced by DNA-surfactants

We investigated DNA-directed aggregation of vesicles using DNA-surfactants. Following tethering of single-stranded DNA oligonucleotides to vesicles using DNA-surfactant, the tethered vesicles were assembled with other vesicles bearing complementary strands. The vesicle aggregation was strongly affected by the salt concentration and by temperature according to the characteristics of DNA hybridization. Restriction enzyme, which can hydrolyze the double-stranded DNA used in the present study, dissociated the vesicle aggregates. Exploration using fluorescently labeled vesicles suggested that the DNA-directed vesicle aggregation took place in a sequence-specific manner through DNA-duplex formation. Interestingly, the DNA-directed aggregation using short DNA-surfactant induced the fusion of vesicles to produce giant vesicles, resulting in an enzymatic reaction in the giant vesicle.     

Light irradiation is a factor in the bactericidal activity of silver-loaded zeolite

Silver loaded zeolite (Ag-Z) was previously found to have effective bactericidal activity against Escherichia coli. To understand the mechanisms of bactericidal activity of Ag-Z, role of light irradiation was focused and investigated in this study. In this study, we focused on light irradiation. Antibacterial assay and spectroscopic study revealed that light irradiation enabled Ag-Z to reduce dioxygen to form a reactive oxygen species, which led to bactericidal activity. These results indicate that the onset of bactericidal activity can be controlled by light irradiation.     

A catalytically active molecularly imprinted polymer that mimics peroxidase based on hemin: application to the determination of<Emphasis Type="Italic"> p</Emphasis>-aminophenol

Despite the increasing number of applications of molecularly imprinted polymers (MIP) in analytical chemistry, the synthesis of polymers with hemin introduced as the catalytic center to mimic the active site of peroxidase remains as a challenge. In the current work, a new type of molecularly imprinted polymer (MIP) was synthesized with 4-aminophenol (4-APh) as the template and two monomers: hemin, which acts as the catalytic center, and methacrylic acid (MAA), which is used to build the active sites. This work shows that MIP successfully mimics peroxidase. For this purpose, a flow injection analysis system coupled to an amperometric detector was investigated through multivariate analysis. The determination of 4-APh was not affected by the equimolar presence of structurally similar phenol compounds, including catechol, 4-chloro-3-methylphenol, 2-aminophenol, guaiachol, chloroguaiachol and 2-cresol, thus highlighting the good performance of the imprinted polymer. Under the optimized experimental conditions, an analytical curve covering a wide linear response range from 0.8 up to 500 μmol L⁻¹ (r > 0.999) was obtained, and the method gave satisfactory precisions (n = 8), as evaluated via the relative standard deviation (RSD), of 4.1 and 3.2% for solutions of 4-APh of 50 and 500 μmol L⁻¹, respectively. Recoveries of 96–111% from water samples (tap water and river water) spiked with 4-APh were achieved, thus illustrating the accuracy of the proposed system. Figure Schematic presentation of the synthesis of the MIP     

External electric field effects on absorption, fluorescence, and phosphorescence spectra of diphenylpolyynes in a polymer film

External electric field effects on absorption, fluorescence, and phosphorescence spectra of a series of unsubstituted diphenylpolyynes have been examined in a PMMA film. The analysis of the electroabsorption spectra indicates that the shorter diphenylpolyynes exhibit only the change in molecular polarizability, whereas the longer ones exhibit the change both in dipole moment and in molecular polarizability following absorption. The finding of the change in dipole moment following absorption of centrosymmetric diphenylpolyynes is interpreted in terms of the symmetry distortion upon doping a polymer film. When the external electric field is applied, the fluorescence yield is reduced and enhanced, respectively, in diphenylacetylene and diphenyloctatetrayne, indicating that the rate of the nonradiative process from the fluorescence state is accelerated in diphenylacetylene and decelerated in diphenyloctatetrayne by an external electric field. All of the diphenylpolyynes used in the present study exhibit the change in molecular polarizability following the phosphorescence process.     

Tryptophan 171 in Pharaonis phoborhodopsin (sensory rhodopsin II) interacts with the chromophore retinal and its substitution with alanine or threonine slowed down the decay of M- and O-intermediate

Pharaonis phoborhodopsin (ppR), also called pharaonis sensory rhodopsin II, NpSRII, is a photoreceptor for the photophobic response of Natronomonas pharaonis. Tryptophan 182 (W182) of bacteriorhodopsin (bR) is near the chromophore retinal and has been suggested to interact with retinal during the photoreaction and also to be involved in the hydrogen-bonding network around the retinal. W182 of bR is conserved in ppR as tryptophan 171 (W171). To elucidate whether W171 of ppR interacts with retinal during the photoreaction and/or is involved in the hydrogen-bonding network as in bR, we formed W171-substituted mutants of ppR, W171A and W171T. Our low-temperature spectroscopic study has revealed that the substitution of W171 to Ala or Thr resulted in the stabilization of M- and O-intermediates. The stability of M and absorption spectral changes during the M-decay were different depending on the substituted residue. These findings suggest that W171 in ppR interacts with retinal and the degree of the interaction depends on the substituted residues, which might be rate determining in the M-decay. In addition, the involvement of W171 in the hydrogen-bonding network is suggested by the O-decay. We also found that glycerol slowed the decay of M and not of O.