Application of chemical reaction mechanistic domains to an ecotoxicity QSAR model,the KAshinhou Tool for Ecotoxicity (KATE)

The validity of chemical reaction mechanistic domains defined by skin sensitisation in the Quantitative Structure–Activity Relationship (QSAR) ecotoxicity system, KAshinhou Tools for Ecotoxicity (KATE), March 2009 version, has been assessed and an external validation of the current KATE system carried out. In the case of the fish end-point, the group of chemicals with substructures reactive to skin sensitisation always exhibited higher root mean square errors (RMSEs) than chemicals without reactive substructures under identical C- or log?P-judgements in KATE. However, in the case of the Daphnia end-point this was not so, and the group of chemicals with reactive substructures did not always have higher RMSEs: the Schiff base mechanism did not function as a high error detector. In addition to the RMSE findings, the presence of outliers suggested that the KATE classification rules needs to be reconsidered, particularly for the amine group. Examination of the dependency of the organism on the toxic action of chemicals in fish and Daphnia revealed that some of the reactive substructures could be applied to the improvement of the KATE system. It was concluded that the reaction mechanistic domains of toxic action for skin sensitisation could provide useful complementary information in predicting acute aquatic ecotoxicity, especially at the fish end-point.     

Quality control of Photosystem II: where and how does the degradation of the D1 protein by FtsH proteases start under light stress?--Facts and hypotheses

Degradation of the reaction center-binding D1 protein of Photosystem II is central in photoinhibition of Photosystem II. In higher plant chloroplasts, Photosystem II complexes are abundant in the grana. It has been suggested that the Photosystem II complexes containing photodamaged D1 protein migrate for their repair from the grana to the non-appressed stroma thylakoids, where the photodamaged D1 protein is degraded by a specific protease(s) such as filamentation temperature sensitive H (FtsH) protease. There are several possible ways to activate the FtsH proteases. As FtsH is a membrane-bound ATP-dependent metalloprotease, it requires ATP and zinc as essential part of its catalytic mechanism. It is also suggested that a membrane protein(s) associated with FtsH is required for modulation of the FtsH activity. Here, we propose several possible mechanisms for activation of the proteases, which depend on oligomerization of the monomer subunits. In relation to the oligomerization of FtsH subunits, we also suggest unique distribution of active FtsH hexamers on the thylakoids: hexamers of the FtsH proteases are localized near the Photosystem II complexes at the grana. Degradation of the D1 protein probably takes place in the grana rather than in the stroma thylakoids to circumvent long-distance migration of both the Photosystem II complexes containing the photodamaged D1 protein and the proteases.     

Unbound excited states in C

The neutron-rich carbon isotopes ^19,17C have been investigated via proton inelastic scattering on a liquid hydrogen target at 70 MeV/nucleon. The invariant mass method in inverse kinematics was employed to reconstruct the energy spectrum, in which fast neutrons and charged fragments were detected in coincidence using a neutron hodoscope and a dipole magnet system. A peak has been observed with an excitation energy of 1.46(10) MeV in ¹⁹C, while three peaks with energies of 2.20(3), 3.05(3), and 6.13(9) MeV have been observed in ¹⁷C. Deduced cross sections are compared with microscopic DWBA calculations based on p-sd   shell model wave functions and modern nucleon–nucleus optical potentials. Jπ$J^{\pi }$ assignments are made for the four observed states as well as the ground states of both nuclei.     

Exosomal MicroRNA as Biomarkers for Diagnosing or Monitoring the Progression of Ovarian Clear Cell Carcinoma: A Pilot Study

Ovarian cancer is the most common cause of gynecological malignancy-related mortality since early-stage disease is difficult to diagnose. Advanced clear cell carcinoma of the ovary (CCCO) has dismal prognosis, and its incidence has been increasing in Japan, emphasizing the need for highly sensitive diagnostic and prognostic CCCO biomarkers. Exosomal microRNAs (miRNAs) secreted by tumor cells are known to play a role in carcinogenesis; however, their involvement in ovarian cancer is unclear. In this study, we performed expression profiling of miRNAs from exosomes released by five cell lines representing different histological types of ovarian cancer. Exosomes isolated from culture media of cancer and normal cells were compared for miRNA composition using human miRNA microarray. We detected 143 exosomal miRNAs, whose expression was ≥1.5-fold higher in ovarian cancer cells than in the control. Among them, 28 miRNAs were upregulated in cells of all histological ovarian cancer types compared to control, and three were upregulated in CCCO cells compared to other types. Functional analyses indicated that miR-21 overexpressed in CCCO cells targeted tumor suppressor genes PTEN, TPM1, PDCD4, and MASP1. The identified miRNAs could represent novel candidate biomarkers to diagnose or monitor progression of ovarian cancer, particularly CCCO.     

ChemInform Abstract: First‐Principles Investigation of R2O3(ZnO)3 (R: Al,Ga, and In) in Homologous Series of Compounds.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 200 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Cover Picture: Electrochemical Lossy Mode Resonance-based Fiber Optic Sensing for Electroactive Species (Electroanalysis 3/2023)

We present an electrochemical-lossy mode resonance (LMR) sensing method that detects refractive indices and electroactive species. The LMR peaks of indium-tin-oxide in the transmittance-wavelength spectra were significantly shifted as the applied potential between 1.0 and −0.5 V at 209 nm/V. The modulation was exploited for sensing the refractive index and electroactive species (ferrocyanide and methylene blue) in two ways: peak-wavelength tracking and potential scanning. The potential-scanning technique produced clear potential LMR peaks in the transmittance-potential spectra for the first time, which were corresponded to the external refractive index. Meanwhile, the limits of detection of ferrocyanide and methylene blue were 7.5 and 25.3 μM, respectively, in peak-wavelength tracking and 18.2 and 20.8 μM, respectively, in the potential scanning technique.     

Synthesis and characterization of polymers from itaconic acid derivatives

Some itaconic acid derivatives were prepared and polymerized, in which itaconic acid (IA), β-monoalkyl itaconates (mRI), dialkyl itaconates (DRI), N-substituted itaconamates (IAE), itaconamides (IAm), itaconic anhydride (IAn), N-alkylitaconimides (RII), and N-(alkyl-substituted phenyl)itaconimides (RPhII) are included. The polymerization reactivity was examined, and discussed in relation to the structure of the monomers. The structure and some properties of the resulting polymers were investigated. Some citraconic acid (CA) and mesaconic acid (MA) derivatives were also polymerized, and their reactivities were compared with the corresponding IA derivatives.     

Evaluation of the accuracy of hTERT gene aberrant methylation using electrochemical hybridization assay and liquid-based cytology in screening for oral squamous cell carcinoma

In order to improve the survival rate of oral squamous cell carcinoma (OSCC) patients, a reliable diagnostic method for early OSCC detection is required that is minimally invasive, less burdensome to the patient, and has high sensitivity and specificity. Therefore, we performed the detection of abnormal methylation at three locations in the hTERT promoter region of oral exfoliated cells by employing the ferrocenylnaphthalene diimide (FND)-based electrochemical hybridization assay (FND-EHA) using three types of DNA probe-immobilized electrodes. We also performed liquid cytology using oral exfoliated cells and compared these obtained data to evaluate whether FND- EHA can be used as an OSCC screening system. The results showed a good correlation between this method and conventional OSCC screening, and cytology. In addition, FND-EHA was also able to determine samples that had been ambiguously determined by liquid cytology. This indicates that FND-EHA may be useful as an OSCC screening system.