Helical DNA Origami Tubular Structures with Various Sizes and Arrangements

We developed a novel method to design various helical tubular structures using the DNA origami method. The size‐controlled tubular structures which have 192, 256, and 320 base pairs for one turn of the tube were designed and prepared. We observed the formation of the expected short tubes and unexpected long ones. Detailed analyses of the surface patterns of the tubes showed that the short tubes had mainly a left‐handed helical structure. The long tubes mainly formed a right‐handed helical structure and extended to the directions of the double helical axes as structural isomers of the short tubes. The folding pathways of the tubes were estimated by analyzing the proportions of short and long tubes obtained at different annealing conditions. Depending on the number of base pairs involved in one turn of the tube, the population of left‐/right‐handed and short/long tubes changed. The bending stress caused by the stiffness of the bundled double helices and the non‐natural helical pitch determine the structural variety of the tubes.     

EFFECT OF VITAMIN E ON CYTOTOXICITY, DNA SINGLE STRAND BREAKS, CHROMOSOMAL ABERRATIONS, AND MUTATION IN CHINESE HAMSTER V-79 CELLS EXPOSED TO ULTRAVIOLET-B LIGHT

The effect of pretreatment with vitamin E on cytotoxicity, DNA single strand breaks, and chromosomal aberrations as well as on mutation induced by ultraviolet-B light (UV-B) was investigated in Chinese hamster V-79 cells. Cellular pretreatment with non-toxic levels of 25 microM alpha-tocopherol succinate (vitamin E) for 24 h prior to exposure resulted in a 10-fold increase in cellular levels of alpha-tocopherol. Using a colony-forming assay, this pretreatment decreased the cytotoxicity of UV-B light. However, alkaline elution assays demonstrated that pretreatment with vitamin E did not affect the number of DNA single strand breaks caused by UV-B light. In addition, UV-B exposure produced a dose-dependent induction of chromosomal aberrations and mutations at the HGPRT locus, and neither of these actions of UV-B was influenced by pretreatment with the vitamin. These results suggest that vitamin E protects cells from UV-B-induced cytotoxicity, possibly through its ability to scavenge free radicals. The results also suggest that the extent of genotoxicity induced by UV-B light may not correlate directly with the cytotoxic action of this wavelength region in sunlight.     

Removal of aqueous ammonium with magnesium phosphates obtained from the ammonium-elimination of magnesium ammonium phosphate

In order to recycle magnesium ammonium phosphate (MgNH4PO4.6H2O: MAP) obtained from MAP process, which is one of the attractive processes for removal of aqueous ammonium and phosphate from wastewater, ammonium elimination from MAP to magnesium phosphates and ammonium incorporation into the magnesium phosphates have been investigated in the present study. It is confirmed that magnesium hydrogen phosphate (MgHPO4) is favorably obtained from the ammonium elimination from MAP at temperatures greater than 353 K, although magnesium phosphate (Mg3(PO4)2) and magnesium pyrophosphate (Mg2P2O7) have been suggested as possible candidates. Based on the dissolution-precipitation mechanism for the removal of aqueous ammonium with magnesium phosphates, three magnesium phosphates were employed for the removal of aqueous ammonium. The order of the removal rate of the aqueous ammonium was MgHPO4>Mg3(PO4)2>Mg2P2O7, as expected from the solubility of those magnesium phosphates. The removability of the solid obtained from ammonium elimination of MAP is also confirmed. The present results show that MAP can be employed as an advanced material for the removal/recovery of ammonium, although it is generally accepted that an excess of MAP obtained from the wastewater treatment can be only used as a slow-acting fertilizer.     

Comprehensive visualization of detonation-diffraction structures and sizes in unstable and stable mixtures

The geometry and characteristic length of diffraction and re-initiation during a two-dimensional detonation propagation were revealed by visualization. C₂H₄ + 3O₂ (unstable), 2C₂H₂ + 5O₂ + 7Ar (stable) and 2C₂H₂ + 5O₂ + 21Ar (stable) were used as the test mixtures. Experiments were performed over the deviation angle range from 30° to 150° and the initial pressure range from 15.8 to 102.3 kPa. By self-emitting photography, we confirmed that the geometry and the characteristic length of diffraction are not different among test gases, with the exception of the fan-like structure of re-initiation that occurred regardless of whether the mixture was unstable or stable. We conducted a compensative experiment by changing the deviation angle and initial pressure, and summarized the detonation diffraction by shadowgraph. At deviation angles larger than 60°, we measured the distances from the vertex of the channel corner to the point where the transverse detonation wave reflected on the under wall (= wall reflection distance) and confirmed that wall reflection distances are approximately in the range of 10–15 times the cell width, whether the mixture is unstable or stable.     

Preparation of poly(phosphate ester)s having bisphenol moieties as mesogenic units in the main chain

Poly(phosphate ester)s, PPE 1a–d , were synthesized from polycondensation of methyl phosphorodichloridate (MPDC) with various bisphenols such as 4,4′-biphenol 1a , 4,4′-dihydroxyphenylether 1b , bis(4-hydroxyphenyl)methane 1c , and 3,3′-dimethyl-4,4′-dihy-droxybiphenyl 1d . PPE 2a–d with hexamethylene spacers were also obtained from poly-condensation of MPDC with 4,4′-bis(6-hydroxyhexyloxy)biphenyl 2a , 4,4′-di(6-hydroxyhexyloxy)phenyl ether 2b , bis[4-(6-hydroxyhexyloxy)phenyl]methane 2c , and 3,3′-dimethyl 4,4′-di(6-hydroxyhexyloxy)biphenyl 2d . The degree of crystallinity of PPE 1a–1d without hexamethylene spacer was 3.3–17.6%, whereas PPE 2a and PPE 2b which exhibit mesomorphic behavior were 20.1 and 18.6%, respectively. PPE 2a and PPE 2b show the mesophase at 139.6–195.5°C and 42.4–66.3°C, respectively. PPE 2c and PPE 2d were obtained as rubbery. From pyrolysis of PPE in air the temperature corresponding to 5% weight loss was found to be 322–408°C and 284–291°C for PPE 1 and PPE 2 , respectively. It was also found that PPE 2a was enzymatically degraded by phospholipase C. © 1994 John Wiley & Sons, Inc.     

HPLC analysis of manno-oligosaccharides derived from Saccharomyces cerevisiae mannan using an amino column or a graphitized carbon column

The chromatographic behavior of manno-oligosaccharides derived from Saccharomyces cerevisiae mannan on two kinds of HPLC columns, an aminopropyl-silica column or a graphitized carbon column (GCC), was investigated. The order of elution of manno-oligosaccharides on both columns with acetonitrile-water was almost the same, that is, the retention increased with increasing molecular size. However, the GCC made it possible to isolate completely two isomers of mannotrioses (M(3)-1 and M(3)-2) with different linkage positions. We reinvestigated the structures of mannobiose (M(2)), M(3)s, and mannotetraose (M(4)) that were completely isolated by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and NMR spectroscopy.     

Self-assembly and gelation behavior of tris(phenylisoxazolyl)benzenes

Low-molecular-mass organic gelators (LMOG), tris(phenylisoxazolyl)benzenes, were synthesized, and their self-assembling behavior was examined using (1)H NMR and UV-vis absorption spectroscopies. They turned into a gel in both nonpolar and highly polar solvents such as methylcyclohexane, ether, acetone, dimethylsulfoxide, etc. Field emission scanning electron microscopy (FESEM) observation of the xerogels of 1 and 3 possessing the saturated alkyl chains revealed that well-developed straight fibers were formed, whereas the unsaturated termini of the alkyl chains of 2 promoted the formation of both the right- and left-handed helical fibers. The self-association behavior of 1, 2, and 5 in solution were investigated using (1)H NMR and UV-vis spectroscopies. The flat aromatic compound 1 stacked in a columnar fashion along its C(3) axis via π-π stacking interactions. The assemblies were regulated by the peripheral alkyl substituents; the saturated alkyl groups facilitated the assemblies while terminal double bonds impeded the intermolecular association, and the branched substituents obviously interfered in the formation of the stacks, probably due to steric requirements. Theoretical calculations suggest that the three dipoles of the isoxazole groups adopt the circular array. The conformational search of the hexameric stacks of 4 using MacroModel V9.1 gave rise to two major conformers: one is nonhelical and the other is helical. Further detailed structural analysis of the assemblies of chiral 5 using circular dichroism (CD) measurements indicated that their assemblies adopt helical structures in solution. CD spectra and DFT calculations revealed that R-5 forms a left-handed supramolecular helicate. The coassembly of R- and S-5 displayed chiral amplification, since the chiral information from 5 was transferred to the supramolecular chirality of the helical assemblies of 1. A small amount of optically active 5 provided enough chiral stimulus to produce a remarkable chiral response and supramolecular helical structures of 1.     

Three-Dimensional Large Deformation Analysis of the Multibody Pantograph/Catenary Systems

To accurately model the nonlinear behavior of the pantograph/catenary systems, it is necessary to take into consideration the effect of the large deformation of the catenary and its interaction with the nonlinear pantograph system dynamics. The large deformation of the catenary is modeled in this investigation using the three-dimensional finite element absolute nodal coordinate formulation. To model the interaction between the pantograph and the catenary, a sliding joint that allows for the motion of the pan-head on the catenary cable is formulated. To this end, a non-generalized arc-length parameter is introduced in order to be able to accurately predict the location of the point of contact between the pan-head and the catenary. The resulting system of differential and algebraic equations formulated in terms of reference coordinates, finite element absolute nodal coordinates, and non-generalized arc-length and contact surface parameters are solved using computational multibody system algorithms. A detailed three-dimensional multibody railroad vehicle model is developed to demonstrate the use of the formulation presented in this paper. In this model, the interaction between the wheel and the rail is considered. For future research, a method is proposed to deal with the problem of the loss of contact between the pan-head and the catenary cable.