Total synthesis of (S)-(+)-ent-phomapyrones B and surugapyrone B

Phomapyrone B ( 1 ), the 2-pyrones isolated from the phytopathogenic fungus Leptosphaeria maculans, has been synthesized as the enantiomeric form starting from (S)-2-methylbutanol ( 4 ). Surugapyrone B ( 3 ) isolated from Streptmyces sp. USF-6280 as an antioxidant has also been synthesized as a natural form. The absolute configuration of phomapyrone B ( 1 ) was estimated to be the (R)-form and that of surugapyrone B ( 3 ) being the (S)-form. A series of 2-pyrone derivatives 17 have been synthesized through the established procedure and their DPPH radical-scavenging activities have also been evaluated.     

DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels

In native systems, scaffolding proteins play important roles in assembling proteins into complexes to transduce signals. This concept is yet to be applied to the assembly of functional transmembrane protein complexes in artificial systems. To address this issue, DNA origami has the potential to serve as scaffolds that arrange proteins at specific positions in complexes. Herein, we report that Kir3 K⁺ channel proteins are assembled through zinc‐finger protein (ZFP)‐adaptors at specific locations on DNA origami scaffolds. Specific binding of the ZFP‐fused Kir3 channels and ZFP‐based adaptors on DNA origami were confirmed by atomic force microscopy and gel electrophoresis. Furthermore, the DNA origami with ZFP binding sites nearly tripled the K⁺ channel current activity elicited by heterotetrameric Kir3 channels in HEK293T cells. Thus, our method provides a useful template to control the oligomerization states of membrane protein complexes in vitro and in living cells.     

The Bioactive Peptide SL-13R Expands Human Umbilical Cord Blood Hematopoietic Stem and Progenitor Cells In Vitro

Hematopoietic stem and progenitor cell (HSPC) transplantation is a curative treatment of hematological disorders that has been utilized for several decades. Although umbilical cord blood (UCB) is a promising source of HSPCs, the low dose of HSPCs in these preparations limits their use, prompting need for ex vivo HSPC expansion. To establish a more efficient method to expand UCB HSPCs, we developed the bioactive peptide named SL-13R and cultured UCB HSPCs (CD34+ cells) with SL-13R in animal component-free medium containing a cytokine cocktail. Following 9 days of culture with SL-13R, the numbers of total cells, CD34+, CD38− cells, and hematopoietic stem cell (HSC)-enriched cells were significantly increased relative to control. Transplantation of cells cultured with SL-13R into immunodeficient NOD/Shi-scid/IL-2Rγ knockout mice confirmed that they possess long-term reconstitution and self-renewal ability. AHNAK, ANXA2, and PLEC all interact with SL-13R. Knockdown of these genes in UCB CD34+ cells resulted in reduced numbers of hematopoietic colonies relative to SL-13R-treated and non-knockdown controls. In summary, we have identified a novel bioactive peptide SL-13R promoting expansion of UCB CD34+ cells with long-term reconstitution and self-renewal ability, suggesting its clinical use in the future.     

Removal and regeneration of aqueous divalent cations by boehmite

Boehmite (Al(OH)O) was employed for the removal of aqueous Mg(2+), Cu(2+), Cd(2+), Pb(2+), and Co(2+) at 298 K. Although boehmite was able to remove these divalent cations, the greater removal rate with boehmite of Pb(2+) (28.7%) than with Mg(2+), Cu(2+), Cd(2+), and Co(2+) (5.6, 25.3, 10.9, and 13.3%, respectively) was observed under acidic conditions. Under stronger alkaline conditions, in which the lead species was completely dissolved, a greater removal rate of Pb(2+) (more than 80%) was observed under the corresponding conditions employed for the acidic conditions. The removed lead species could not be dissolved from boehmite in an acidic solution while an evident dissolution of lead species was detected using an aqueous NaOH solution. The results shown in the present study reveal that boehmite can be employed as a reagent for the removal and regeneration of aqueous metal cations.     

Synthesis and structural characterization of Ni(II) complexes with the chiral CpH(PNMent) tripod ligand

Treatment of NiCl₂ with the tripod ligand (L_Ment,S_C)-1H led to (L_Ment,S_C)-[Cp(PN_Ment)NiCl] in which the potentially tridentate ligand coordinated to the metal center in a bidentate way via the cyclopentadienyl system and the phosphorus atom. In the presence of NH₄PF₆ [(L_Ment,S_C)-[Cp(PN_Ment)NiCl] readily underwent Cl/PPh₃ exchange to give (L_Ment,S_C)-[Cp(PN_Ment)NiPPh₃]PF₆. Reaction of (L_Ment,S_C)-[Cp(PN_Ment)NiCl] with 0.5 eq. of dppe afforded [{(L_Ment,S_C)-[Cp(PN_Ment)Ni]}₂dppe](PF₆)₂. (L_Ment,S_C)-[Cp(PN_Ment)NiPPh₃]PF₆ and [{(L_Ment,S_C)-[Cp(PN_Ment)Ni]}₂dppe](PF₆)₂ were characterized by NMR and MS spectroscopy, and also by single crystal X-ray diffraction. The cyclopentadienyl ligand of (L_Ment,S_C)-[Cp(PN_Ment)NiPPh₃]PF₆ shows a distortion intermediate between the ene-allyl and diene types, while the two cyclopentadienyl ligands of [{(L_Ment,S_C)-[Cp(PN_Ment)Ni]}₂dppe](PF₆)₂ have intermediate and diene distortions, respectively. According to the temperature dependent NMR spectra of (L_Ment,S_C)-[Cp(PN_Ment)NiPPh₃]PF₆ and [{(L_Ment,S_C)-[Cp(PN_Ment)Ni]}₂dppe](PF₆)₂ two different conformations of the tether in the Cp(PN_Ment)Ni system could be frozen out at low temperatures.     

Numerical analysis of turbulent flow separation in a rectangular duct with a sharp 180‐degree turn by algebraic Reynolds stress model

Turbulent flow in a rectangular duct with a sharp 180‐degree turn is difficult to predict numerically because the flow behavior is influenced by several types of forces, including centrifugal force, pressure‐driven force, and shear stress generated by anisotropic turbulence. In particular, this type of flow is characterized by a large‐scale separated flow, and it is difficult to predict the reattachment point of a separated flow. Numerical analysis has been performed for a turbulent flow in a rectangular duct with a sharp 180‐degree turn using the algebraic Reynolds stress model. A boundary‐fitted coordinate system is introduced as a method for coordinate transformation to set the boundary conditions next to complicated shapes. The calculated results are compared with the experimental data, as measured by a laser‐Doppler anemometer, in order to examine the validity of the proposed numerical method and turbulent model. In addition, the possibility of improving the wall function method in the separated flow region is examined by replacing the log‐law velocity profile for a smooth wall with that for a rough wall. The analysis results indicated that the proposed algebraic Reynolds stress model can be used to reasonably predict the turbulent flow in a rectangular duct with a sharp 180‐degree turn. In particular, the calculated reattachment point of a separated flow, which is difficult to predict in a turbulent flow, agrees well with the experimental results. In addition, the calculation results suggest that the wall function method using the log‐law velocity profile for a rough wall over a separated flow region has some potential for improving the prediction accuracy. Copyright © 2007 John Wiley & Sons, Ltd.