Identification of oligosaccharides from histopathological sections by MALDI imaging mass spectrometry

Direct tissue analysis using matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS) provides the means for in situ molecular analysis of a wide variety of biomolecules. This technology—known as imaging mass spectrometry (IMS)—allows the measurement of biomolecules in their native biological environments without the need for target-specific reagents such as antibodies. In this study, we applied the IMS technique to formalin-fixed paraffin-embedded samples to identify a substance(s) responsible for the intestinal obstruction caused by an unidentified foreign body. In advance of IMS analysis, some pretreatments were applied. After the deparaffinization of sections, samples were subjected to enzyme digestion. The sections co-crystallized with matrix were desorbed and ionized by a laser pulse with scanning. A combination of α-amylase digestion and the 2,5-dihydroxybenzoic acid matrix gave the best mass spectrum. With the IMS Convolution software which we developed, we could automatically extract meaningful signals from the IMS datasets. The representative peak values were m/z 1,013, 1,175, 1,337, 1,499, 1,661, 1,823, and 1,985. Thus, it was revealed that the material was polymer with a 162-Da unit size, calculated from the even intervals. In comparison with the mass spectra of the histopathological specimen and authentic materials, the main component coincided with amylopectin rather than amylose. Tandem MS analysis proved that the main components were oligosaccharides. Finally, we confirmed the identification of amylopectin by staining with periodic acid-Schiff and iodine. These results for the first time show the advantages of MALDI-IMS in combination with enzyme digestion for the direct analysis of oligosaccharides as a major component of histopathological samples.     

Redox reaction in two-dimensional porous coordination polymers based on ferrocenedicarboxylates

A series of 1,1'-ferrocenedicarboxylate-based two-dimensional porous coordination polymers were synthesized by incorporating different diamine co-ligands. These compounds immobilized on electrodes, exhibited reversible redox reactions, arising from ferrocenyl moiety.     

Inclusion and dielectric properties of a vinylidene fluoride oligomer in coordination nanochannels

The dynamics of oligo(vinylidene fluoride) (OVDF) confined in regular nanochannels of a porous coordination polymer (PCP) was studied by means of dielectric spectroscopy. The OVDF chains in the PCP nanopores showed two Arrhenius-type relaxation processes at lower temperatures than the relaxation temperature observed for the neat OVDF, showing the enhanced mobility of the confined OVDF.     

A molecular dynamics study of the lateral free energy profile of a pair of cholesterol molecules as a function of their distance in phospholipid bilayers

Free energy profile of a pair of cholesterol molecules in a leaflet of 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC) bilayers in the liquid-crystalline phase has been calculated as a function of their lateral distance using a combination of NPT-constant atomistic molecular dynamics calculations (P = 1 atm and T = 310.15 K) and the thermodynamic integration method. The calculated free energy clearly shows that the two cholesterol molecules form a dimer separated by a distance of 1.0-1.5 nm in POPC bilayers. Well depth of the free energy profile is about 3.5 kJ/mol, which is comparable to the thermal energy k(B)T at 310.15 K. This indicates that the aggregation of cholesterol molecules in the bilayers depends on the temperature as well as the concentration of the system. The free energy function obtained here may be used as a reference when coarse grained potential model is investigated for this two-component system. Local structure of POPC molecules around two cholesterol molecules has also been investigated.     

Amination of ethers using chloramine-T hydrate and a copper(I) catalyst

Amination of C-H bonds activated by ether oxygen atoms is facile with chloramine-T as nitrene source and copper(I) chloride in acetonitrile as catalyst. For cyclic ethers the hemiaminal products are generally stable and can be isolated pure. For acyclic ethers, the hemiaminal products, as expected, fragment with elimination of alcohol to yield imines. When activation of benzylic positions is remote through a conjugated system, stable benzylamine derivatives are isolated. Mechanistic studies are consistent with concerted insertion of an electrophilic nitrenoid into the C-H bond in the rate-determining step, though in an asynchronous manner with a more activated substrate.     

Chiral Bis(oxazoline)-copper Catalyzed Enantioselective Imidation of Sulfides

Prochiral sulfides reacted with Phl=NTs in the presence of a catalytic amount of Cu(I) salt together with a chiral 4,4′-disubstituted bis(oxazoline) ligand to afford the corresponding chiral sulfimides.     

Molecular Origin for the Thermal Stability of Rice Amylopectin 1

Abstract

The non-Newtonian behavior and dynamic viscoelasticity of Takanari and Reimei amylopectin solutions were measured with a rheogoniometer. The Takanari and Reimei amylopectin showed plastic behavior at a concentration above 2.0% at 25 °C. The viscosity of Takanari amylopectin decreased a little with increasing temperature at 2.0%. However, a little increase in the viscosity was observed with increasing temperature from 0 to 15 °C, then it stayed at a constant value with further increase in the temperature up to 80 °C at a concentration above 4.0%. An increase in the viscosity was also observed in Reimei amylopectin solution at various concentrations. The dynamic viscoelasticity of Takanari amylopectin increased with increasing concentration at low temperature (0 °C) and it stayed at a constant value with increasing temperature up to 80 °C. On the other hand, dynamic viscoelasticity for Reimei amylopectin showed a weak sigmoid curve. The tan δ of both amylopectins showed low values, 0.32-0.38, at low temperature range and kept constant with increasing temperature up to 80 °C. A little decrease of dynamic modulus of Takanari and Reimei amylopectin was observed upon addition of urea (4.0 M). The dynamic modulus of Takanari and Reimei amylopectin solution decreased rapidly when the temperature reached 45 and 60 °C, which was estimated to be a transition temperature, in 0.10 N NaOH solution. The molecular origin for the thermal stability of rice amylopectin (Takanari and Reimei) was essentially attributed to intramolecular associations in aqueous solution. Possible mode of intramolecular hydrogen bonding and van der Waals forces of attraction of amylopectin molecules are proposed.

     

Biosynthetic Conclusions from the Functional Dissection of Oxygenases for Biosynthesis of Actinorhodin and Related Streptomyces Antibiotics

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Highlights? ActVA-ORF5 is a flavin-dependent monooxygenase required for actinorhodin biosynthesis ? ActVA-ORF5 and its three close homologs were functionally dissected ? ActVA-ORF5 and Gra-21 are bifunctional at C-6/C-8, while Med-7 acts only for C-6 ? AlnT exhibits different regiospecificity for oxidation of tricyclic substrates     

Electrodeposition of aluminum–hafnium alloy from the Lewis acidic aluminum chloride-1-ethyl-3-methylimidazolium chloride molten salt

The electrochemistry of Hf(IV) and the electrodeposition of Al–Hf alloys were examined in the Lewis acidic 66.7–33.3 mol% aluminum chloride-1-ethyl-3-methylimidazolium chloride molten salt containing HfCl₄. When cyclic staircase voltammetry was carried out at a platinum disk electrode in this melt, the deposition and stripping waves for Al shifted to negative and positive potentials, respectively, suggesting that aluminum stripping is more difficult due to the formation of Al–Hf alloys. Al–Hf alloy electrodeposits containing ~13 at.% Hf were obtained on Cu rotating wire and cylinder electrodes. The Hf content in the Al–Hf alloy deposits depended on the HfCl₄ concentration in the melt, the electrodeposition temperature, and the applied current density. The deposits were composed of dense crystals and were completely chloride-free. The chloride-induced pitting corrosion potential of the resulting Al–Hf alloys was approximately +0.30 V against pure aluminum when the Hf content was above 10 at.%.     

Methanolysis of Dimethyl (1-Diazo-2-oxopropyl) Phosphonate: Generation of Dimethyl (Diazomethyl) Phosphonate and Reaction with Carbonyl Compounds

Dimethyl (1-diazo-2-oxopropyl) phosphonate (3) was transformed to dimethyl (diazomethyl)—phosphonate (4), which was used for the synthesis of enol ether or alkyne without isolation.