The impact of blood on liver metabolite profiling – a combined metabolomic and proteomic approach

Metabolomics has entered the well‐established omic sciences as it is an indispensable information resource to achieve a global picture of biological systems. The aim of the present study was to estimate the influence of blood removal from mice liver as part of sample preparation for metabolomic and proteomic studies. For this purpose, perfused mice liver tissue (i.e. with blood removed) and unperfused mice liver tissue (i.e. containing blood) were compared by two‐dimensional gas chromatography time of flight mass spectrometry (GC × GC‐TOFMS) for the metabolomic part, and by liquid chromatography tandem mass spectrometry (LC‐MS/MS) for the proteomic part. Our data showed significant differences between the unperfused and perfused liver tissue samples. Furthermore, we also observed an overlap of blood and tissue metabolite profiles in our data, suggesting that the perfusion of liver tissue prior to analysis is beneficial for an accurate metabolic profile of this organ. Copyright © 2013 John Wiley & Sons, Ltd.     

Phosphate-Phosphonate Rearrangement of Aliphatic Phosphates

Abstract

Phosphorylation of various aliphatic alcohols gives phosphates 1 which are deprotonated by sBuLi/TMEDA in diethyl ether, THF or hexane at ?78 °C. The organo-lithiurns 2 and 4 formed isornerize to α-hydroxy- phosphonates 3 and 5 (phosphate-phosphonate rearrangement^[1.2]     

The Gauge–Bethe Correspondence and Geometric Representation Theory

The Gauge/Bethe correspondence of Nekrasov and Shatashvili relates the spectrum of integrable spin chains to the ground states of supersymmetric gauge theories. Up to now, this correspondence has been an observation; the underlying reason for its existence remaining elusive. We argue here that geometrical representation theory is a mathematical foundation of the Gauge/Bethe correspondence, and it provides a framework to study families of gauge theories in a unified way.     

1H MRS detection of glycine residue of reduced glutathione in vivo

Glutathione (GSH) is a powerful antioxidant found inside different kinds of cells, including those of the central nervous system. Detection of GSH in the human brain using ¹H MR spectroscopy is hindered by low concentration and spectral overlap with other metabolites. Previous MRS methods focused mainly on the detection of the cysteine residue (GSH-Cys) via editing schemes. This study focuses on the detection of the glycine residue (GSH-Gly), which is overlapped by glutamate and glutamine (Glx) under physiological pH and temperature. The first goal of the study was to obtain the spectral parameters for characterization of the GSH-Gly signal under physiological conditions. The second goal was to investigate a new method of separating GSH-Gly from Glx in vivo. The characterization of the signal was carried out by utilization of numerical simulations as well as experiments over a wide range of magnetic fields (4.0–14 T). The proposed separation scheme utilizes J-difference editing to quantify the Glx contribution to separate it from the GSH-Gly signal. The presented method retains 100% of the GSH-Gly signal. The overall increase in signal to noise ratio of the targeted resonance is calculated to yield a significant SNR improvement compared to previously used methods that target GSH-Cys residue. This allows shorter acquisition times for in vivo human clinical studies.     

Versatile Organometallic Initiators for the Living Polymerization of Isocyanates

Shashoua and Sweeney first demonstrated that isocyanates could by polymerized via an anionic mechanism to form high molecular weight materials. We have sought to eliminate the problems associated with the anionic procedure by developing transition metal complexes which are capable of catalyzing the living polymerization of isocyanates. Recently, we reported the living polymerization of alkyl isocyanates using TiCl₃OCH₂CF₃, I. Using I, polyisocyanates with controlled molecular weights and narrow polydispersities can be obtained at room temperature. ε⁵-CpTiCl₂N(CH₃)₂ (Cp = cyclopentadienyl), III, is also an excellent catalyst for the polymerization of isocyanates, and in terms of ease of handling and purification and tolerance toward monomer functionality, superior to I. In order to prepare triblock copolymers containing amorphous segments sandwiched between two isocyanate segments, we have prepared bimetallic initiators comprised of titanium alkoxides con- nected by flexible linkers. These linkers may be a small molecule (1,4- dihydroxycyclohexane, V) or a polymer (polydimethylsiloxane, PDMS, VI). Complexes V and VI can be used to initiate the living polymerization of isocyanates to yield polymers possessing central cyclohexyl bends (ldquo;broken worms rdquo;) or PDMS segments (triblock copolymers), respectively. Finally, cyclopolymerizations of 1,2-diisocyanates using these or- ganometallic initiators are reported.     

Knowledge-Based Design of a Biosensor to Quantify Localized ERK Activation in Living Cells

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Electron Transfer between Hydrogen‐Bonded Pyridylphenols and a Photoexcited Rhenium(I) Complex

Two pyridylphenols with intramolecular hydrogen bonds between the phenol and pyridine units have been synthesized, characterized crystallographically, and investigated by cyclic voltammetry and UV/Vis spectroscopy. Reductive quenching of the triplet metal‐to‐ligand charge‐transfer excited state of the [Re(CO)₃(phen)(py)]⁺ complex (phen=1,10‐phenanthroline, py=pyridine) by the two pyridylphenols and two reference phenol molecules is investigated by steady‐state and time‐resolved luminescence spectroscopy, as well as by transient absorption spectroscopy. Stern–Volmer analysis of the luminescence quenching data provides rate constants for the bimolecular excited‐state quenching reactions. H/D kinetic isotope effects for the pyridylphenols are on the order of 2.0, and the bimolecular quenching reactions are up to 100 times faster with the pyridylphenols than with the reference phenols. This observation is attributed to the markedly less positive oxidation potentials of the pyridylphenols with respect to the reference phenols (≈0.5 V), which in turn is caused by proton coupling of the phenol oxidation process. Transient absorption spectroscopy provides unambiguous evidence for the photogeneration of phenoxyl radicals, that is, the overall photoreaction is clearly a proton‐coupled electron‐transfer process.     

Arraying Cell Cultures Using PEG‐DMA Micromolding in Standard Culture Dishes

A robust and effortless procedure is presented, which allows for the microstructuring of standard cell culture dishes. Cell adhesion and proliferation are controlled by three‐dimensional poly(ethylene glycol)‐dimethacrylate (PEG‐DMA) microstructures. The spacing between microwells can be extended to millimeter size in order to enable the combination with robotic workstations. Cell arrays of microcolonies can be studied under boundary‐free growth conditions by lift‐off of the PEG‐DMA layer in which the growth rate is accessible via the evolution of patch areas. Alternatively, PEG‐DMA stencils can be used as templates for plasma‐induced patterning.

     

Identification and characterization of individual airborne volcanic ash particles by Raman microspectroscopy

We present for the first time the Raman microspectroscopic identification and characterization of individual airborne volcanic ash (VA) particles. The particles were collected in April/May 2010 during research aircraft flights, which were performed by Deutsches Zentrum für Luft- und Raumfahrt in the airspace near the Eyjafjallajökull volcano eruption and over Europe (between Iceland and Southern Germany). In addition, aerosol particles were sampled by an Electrical Low Pressure Impactor in Munich, Germany. As references for the Raman analysis, we used the spectra of VA collected at the ground near the place of eruption, of mineral basaltic rock, and of different minerals from a database. We found significant differences in the spectra of VA and other aerosol particles (e.g., soot, nitrates, sulfates, and clay minerals), which allowed us to identify VA among other atmospheric particulate matter. Furthermore, while the airborne VA shows a characteristic Raman pattern (with broad band from ca. 200 to ca. 700 cm^?1 typical for SiO₂ glasses and additional bands of ferric minerals), the differences between the spectra of aged and fresh particles were observed, suggesting differences in their chemical composition and/or structure. We also analyzed similarities between Eyjafjallajökull VA particles collected at different sampling sites and compared the particles with a large variety of glassy and crystalline minerals. This was done by applying cluster analysis, in order to get information on the composition and structure of volcanic ash.