Influence of structural features on the self‐assembly of short ionic oligopeptides

We investigated the self‐aggregation of 12 short ionic oligopeptides constituted by 4–7 amino acid residues to establish useful structure–property relationships that might be exploited in the biomedical field by using the concept of molecular Lego. We show that the critical aggregation concentration (CAC) of tetrapeptides decreases with increasing hydrophobicity of neutral residues. Additionally, the dependence of the CAC of isomeric oligopeptides on the distribution of amino acid residues confirms the high tendency to self‐organization of molecules with alternating ionic and neutral residues. Indeed, atomic force microscopy (AFM) images recorded on oligopeptide solutions above the CAC show the presence of either fibrillar or spherical aggregates depending on oligopeptide structure and concentration, steric hindrance, solution pH, and time. The potential of the investigated oligopeptides in tissue engineering applications is supported by their in vitro cytocompatibility. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 889–897, 2010     

Periodic solutions to some problems of n-body type

We prove the existence of at least one T-periodic solution to a dynamical system of the type $$ - m_i \ddot u_i = \sum\limits_{j = 1,j \ne i}^n {\triangledown V_{ij} (u_i - u_j ,{\text{ }}t)}$$ (1) where the potentials V _ij are T-periodic in t and singular at the origin, u _i ε R ^k i=1, ..., n, and k≧3. We also provide estimates on the H ¹ norm of this solution. The proofs are based on a variant of the Ljusternik-Schnirelman method. The results here generalize to the n-body problem some results obtained by Bahri & Rabinowitz on the 3-body problem in [6].     

Electrospray ionization ion-trap multiple-stage mass spectrometry of Quillaja saponins

Fifteen identified C-18 fatty acyl-containing saponin structures from Quillaja saponaria Molina have been investigated by electrospray ionization ion-trap multiple-stage mass spectrometry (ESI-IT-MS(n)) in positive ion mode. Their MS(1)-MS(3) spectra were analyzed and ions corresponding to useful fragments, important for the structural identification of Quillaja saponins, were recognized. A few key fragments could describe the structural variations in the C-3 and the C-28 oligosaccharides of the Quillaja saponins. A flowchart involving a stepwise procedure based on key fragments from the MS(1)-MS(3) spectra of these saponins, together with key fragments from these saponins and 13 previously investigated saponins, was constructed for the identification of structural elements in Quillaja saponins. Peak intensity ratios in MS(3) spectra were found to be correlated to structural features of the investigated saponins and is therefore of value for the identification of regioisomers.     

Poly(ester urethane) guides for peripheral nerve regeneration

A biocompatible and elastomeric PU was synthesized from low-molecular-weight PCL as macrodiol, CMD as chain extender and HDI as chain linker for applications in the field of peripheral nerve repair. PU cast films supported in vitro attachment and proliferation of NOBEC. The in vitro adhesion and proliferation of S5Y5 neuroblastoma cells on the inner surface of uncoated, gelatin- and PL-coated PU guides were compared. Due to their superior in vitro performance, PL-coated PU guides were tested in vivo for the repair of 1.8 cm-long defects in rat sciatic nerves. The progressive regeneration was confirmed by EMG and histological analysis showing the presence of regenerating fibers in the distal stumps.     

The reversibility and the center problem

In this work we study the narrow relation between reversibility and the center problem and also between reversibility and the integrability problem. It is well known that an analytic system having either a non-degenerate or nilpotent center at the origin is analytically reversible or orbitally analytically reversible, respectively. In this paper we prove the existence of a smooth map that transforms an analytic system having a degenerate center at the origin with either an analytic first integral or a C^∞ inverse integrating factor into a reversible linear system (after rescaling the time). Moreover, if the degenerate center has an analytic or a C^∞ reversing symmetry, then the transformed system by the map also has a reversing symmetry. From the knowledge of a first integral near the center we give a procedure to detect reversing symmetries.     

Radical scavenging activity of sterically hindered catecholate and o-amidophenolate complexes of LSbPh3 type

The radical scavenging effect of the substituted catecholates (1-3, 6) and o-amidophenolates (4, 5) of triphenylantimony(V) in reactions with DPPH^• radical and in a process of oleic acid peroxidation was studied in details. Complexes 1-6 show the high activity in radical scavenging reactions with DPPH^• radical leading to disappearance of radical species. Complexes were demonstrated to be high-efficient inhibitors of chain-radical process of the peroxidation of oleic acid as well as the effective destructors of the formed hydroperoxides. It was found that the effectiveness of complexes studied in the inhibition of the peroxidation of oleic acid depends on the first oxidation potential of complex.     

Primer extension reactions as a tool to uncover folding motifs within complex G-rich sequences: analysis of the human KRAS NHE

We employed primer extension reactions to uncover folding motifs in a nuclease hypersensitive element (NHE) with a complex guanine pattern, located in the human KRAS promoter. We also identified and characterized a new G-rich motif of 21 nt capable of forming a parallel G-quadruplex that is disrupted by protein UP1.     

Molecular geometries of H2S···ICF3 and H2O···ICF3 characterised by broadband rotational spectroscopy

The rotational spectra of three isotopologues of H(2)S···ICF(3) and four isotopologues of H(2)O···ICF(3) are measured from 7-18 GHz by chirped-pulse Fourier transform microwave spectroscopy. The rotational constant, B(0), centrifugal distortion constants, D(J) and D(JK), and nuclear quadrupole coupling constant of (127)I, χ(aa)(I), are precisely determined for H(2)S···ICF(3) and H(2)O···ICF(3) by fitting observed transitions to the Hamiltonians appropriate to symmetric tops. The measured rotational constants allow determination of the molecular geometries. The C(2) axis of H(2)O/H(2)S intersects the C(3) axis of the CF(3)I sub-unit at the oxygen atom. The lengths of halogen bonds identified between iodine and sulphur, r(S···I), and iodine and oxygen, r(O···I), are determined to be 3.5589(2) ? and 3.0517(18) ? respectively. The angle, φ, between the local C(2) axis of the H(2)S/H(2)O sub-unit and the C(3) axis of CF(3)I is found to be 93.7(2)° in H(2)S···ICF(3) and 34.4(20)° in H(2)O···ICF(3). The observed symmetric top spectra imply nearly free internal rotation of the C(2) axis of the hydrogen sulphide/water unit about the C(3) axis of CF(3)I in each of these complexes. Additional transitions of H(2)(16)O···ICF(3), D(2)(16)O···ICF(3) and H(2)(18)O···ICF(3) can be assigned only using asymmetric top Hamiltonians, suggesting that the effective rigid-rotor fits employed do not completely represent the internal dynamics of H(2)O···ICF(3).     

Absorption and emission spectra of fluorescent silica nanoparticles from TD-DFT/MM/PCM calculations

A multi-scale computational protocol, which combines Quantum Mechanics and Molecular Mechanics (QM/MM) calculations with the polarisable continuum model (PCM), has been used to study the tetramethylrhodamine isothiocyanate (TRITC) fluorophore, embedded in three different environments, namely in water, on an amorphous silica surface and covalently encapsulated in a silica nanoparticle (C dot). Absorption and emission spectra have been simulated by using TD-B3LYP/PCM calculations, performed on the TRITC ground and excited state geometries, optimized at the QM/MM level. The results are in good agreement with experimental data confirming the caging effect played by the silica shell on the mobility of the TRITC molecule when covalently encapsulated in silica nanoparticles. This could result in a decrease of the nonradiative decay rate and thus an increase of the quantum yield of the molecule.