Clionasterol Glucoside and Acylated Clionasterol Glucosides from Oplismenus burmannii

A new clionasterol glucoside, clionasterol‐[(1'→3α)‐O‐β‐D]‐glucopyranoside ( 1 ), a new acylated clionasterol glucoside, clionasterol‐[6'‐O‐acyl‐(1'→3β)‐O‐b‐D]‐glucopyranoside ( 2 ) and clionasterol ( 3 ) were isolated from the aerial parts of Oplismenus burmannii. The nature and length of fatty acid acyl chains in 2 was identified by alkaline methanolysis of compound 2 . The aglycone fraction on GC‐MS analysis showed three peaks in GC at t_R 49.86 (82.1%), 51.13 (13.3%) and 56.53 (4.6%) min, which were characterized as arachidic acid methyl ester ( a ) oleic acid methyl ester ( b ) and 12‐methyltetradecanoic acid methyl ester ( c ) respectively. Thus 2 was characterized as a mixture of three new compounds, clionasterol‐[6'‐O‐eicosanoyl‐(1'→3β)‐O‐β‐D]‐glucopyranoside ( 2a ), clionasterol‐[6'‐O‐(8Z)‐octa‐deca‐9‐enoyl‐(1'→3β)‐O‐β‐D]‐glucopyranoside ( 2b ) and clionasterol‐[6'‐O‐(12‐methyltetradecanoyl)‐(1'→3β)‐O‐β‐D]‐glucopyranoside ( 2c ).     

An Improved Protocol for DNA Extraction from Alkaline Soil and Sediment Samples for Constructing Metagenomic Libraries

An improved single-step protocol has been developed for extracting pure community humic substance-free DNA from alkaline soils and sediments. The method is based on direct cell lysis in the presence of powdered activated charcoal and polyvinylpolypyrrolidone followed by precipitation with polyethyleneglycol and isopropanol. The strategy allows simultaneous isolation and purification of DNA while minimizing the loss of DNA with respect to other available protocols for metagenomic DNA extraction. Moreover, the purity levels are significant, which are difficult to attain with any of the methods reported in the literature for DNA extraction from soils. The DNA thus extracted was free from humic substances and, therefore, could be processed for restriction digestion, PCR amplification as well as for the construction of metagenomic libraries.     

Carbon nanotube-nucleobase hybrids: nanorings from uracil-modified single-walled carbon nanotubes

Single‐walled carbon nanotubes (SWCNTs) have been covalently functionalized with uracil nucleobase. The hybrids have been characterized by using complementary spectroscopic and microscopic techniques including solid‐state NMR spectroscopy. The uracil‐functionalized SWCNTs are able to self‐assemble into regular nanorings with a diameter of 50–70 nm, as observed by AFM and TEM. AFM shows that the rings do not have a consistent height and thickness, which indicates that they may be formed by separate bundles of CNTs. The simplest model for the nanoring formation likely involves two bundles of CNTs interacting with each other via uracil–uracil base‐pairing at both CNT ends. These nanorings can be envisaged for the development of advanced electronic circuits.     

Exciton-coupled charge-transfer dynamics in a porphyrin J-aggregate/TiO(2) complex

Exciton-coupled charge-transfer (CT) dynamics in TiO(2) nanoparticles (NP) sensitized with porphyrin J-aggregates has been studied by femtosecond time-resolved transient absorption spectroscopy. J-aggregates of 5,10,15-triphenyl-20-(3,4-dihydroxyphenyl) porphyrin (TPPcat) form CT complexes on TiO(2) NP surfaces. Catechol-mediated strong CT coupling between J-aggregate and TiO(2) NP facilitates interfacial exciton dissociation for electron injection into the conduction band of the TiO(2) nanoparticle in pulse width limited time (<80 fs). Here, the electron-transfer (<80 fs) process dominates over the intrinsic exciton-relaxation process (J-aggregates: ca. 200 fs) on account of exciton-coupled CT interaction. The parent hole on J-aggregates is delocalized through J-aggregate excitonic coherence. As a result, holes immobilized on J-aggregates are spatially less accessible to electrons injected into TiO(2) , and thus the back electron transfer (BET) process is slower than that of the monomer/TiO(2) system. The J-aggregate/porphyrin system shows exciton spectral and temporal properties for better charge separation in strongly coupled composite systems.     

An efficient biomaterial supported bifunctional organocatalyst (ES-SO3- C5H5NH+) for the synthesis of β-amino carbonyls

A biomaterial supported organocatalyst, readily synthesized by the reaction of chemically modified sulfonic group containing expanded corn starch with pyridine exhibited excellent catalytic activity for the synthesis of β-amino carbonyls in excellent yields via aza-Michael addition of amines to electron deficient alkenes. A remarkable enhancement in the reaction rates was observed with the prepared bifunctional organocatalyst in comparison to the either starch grafted sulfonic acid or the corresponding homogeneous pyridinium p-toluenesulfonate.     

Comparative study of volatile oil compositions of two Plectranthus species from northern India

The leaf and inflorescence essential oils of Plectranthus rugosus Wall. (syn. Rabdosia rugosa Wall.) and Plectranthus incanus L. (syn. Plectranthus mollis L.), which grow wild in Uttarakhand, India, were analysed and compared by capillary gas chromatography and gas chromatography-mass spectrometry. The analysis led to the identification of 43 constituents, forming 89.5-93.6% of the total oil compositions. Both leaf and inflorescence oil of P. rugosus were dominated by sesquiterpene hydrocarbons (71.8%, 71.7%) represented by β-caryophyllene (36.2%, 29.8%), germacrene D (25.2%, 28.2%) and α-humulene (6.6%, 8.6%) as the major constituents. Conversely, the leaf and inflorescence oil of P. incanus were dominated by monoterpenoids (74.4%, 65.8%) with piperitenone oxide (44.2%, 38.5%), piperitone (8.6%, 12.2%) and terpinolene (14.5%, 10.2%) as major constituents. Piperitenone oxide, piperitone, cis- and trans-piperitols and trans-piperitol acetate were the marker constituents in P. incanus, which were not noted in the essential oil of P. rugosus.     

Adsorbents based on carbon microfibers and carbon nanofibers for the removal of phenol and lead from water

This paper describes the production, characteristics, and efficacy of carbon microfibers and carbon nanofibers for the removal of phenol and Pb(2+) from water by adsorption. The first adsorbent produced in the current investigation contained the ammonia (NH(3)) functionalized micron-sized activated carbon fibers (ACF). Alternatively, the second adsorbent consisted of a multiscale web of ACF/CNF, which was prepared by growing carbon nanofibers (CNFs) on activated ACFs via catalytic chemical vapor deposition (CVD) and sonication, which was conducted to remove catalytic particles from the CNF tips and open the pores of the CNFs. The two adsorbents prepared in the present study, ACF and ACF/CNF, were characterized by several analytical techniques, including SEM-EDX and FT-IR. Moreover, the chemical composition, BET surface area, and pore-size distribution of the materials were determined. The hierarchal web of carbon microfibers and nanofibers displayed a greater adsorption capacity for Pb(2+) than ACF. Interestingly, the adsorption capacity of ammonia (NH(3)) functionalized ACFs for phenol was somewhat larger than that of the multiscale ACF/CNF web. Difference in the adsorption capacity of the adsorbents was attributed to differences in the size of the solutes and their reactivity towards ACF and ACF/CNF. The results indicated that ACF-based materials were efficient adsorbents for the removal of inorganic and organic solutes from wastewater.     

Characterization of an unprecedented organomercury adduct via Hg(II)-mediated cyclization of N9-propargylguanine

This communication describes mercury(II)-mediated cyclization of N9-propargylguanine under hydrothermal conditions. The structural investigations reported here confirm cyclization and reveal simultaneous formation of a unique organomercury adduct of a tricyclic guanine derivative.     

Solid state kinetics of Cu(II) complex of [2-(1,2,3,4-thiatriazole-5-yliminomethyl)-phenol] from thermo gravimetric analysis

The ligand [2-(1,2,3,4-thiatriazole-5-yliminomethyl)-phenol] (L) is a schiff base derived from condensation reaction of 1,2,3,4-thiatriazole-5-ylamine and Salicylaldehyde. Synthesis of the ligand (L) and the complex [Cu(II)(L)₂]·2H₂O have been studied in our previous work (Bharti et al., Asian J Chem 23(2):773–776, 2011). Thermal decomposition behavior of synthesized Cu(II) complex has been investigated by thermo gravimetric (TG) analysis at heating rate of 10 °C min⁻¹ under nitrogen atmosphere. The mechanism of decomposition of Cu(II) complex has been established from TG data. Kinetic parameters such as order of reaction (n), activation energy (E _a), frequency factor (Z) and entropy of activation (∆S ^≠) were calculated by using Freeman and Carroll (J Phys Chem 62:394–397, 1958) as well as Doyle’s methods as modified by Zsako (J Phys Chem 72(7):2406–2411, 1968).     

Systematic mutational analysis of an ubiquitin ligase (MDM2)-binding peptide: computational studies

To understand the importance of amino acids that comprise the peptide PMI (p53-MDM2/MDMX inhibitor), a p53-mimicking peptide with high affinity for the ubiquitin ligase MDM2, computational alanine scanning has been carried out using various protocols. This approach is very useful for identifying regions of a peptide that can be mutated to yield peptides that bind to their targets with higher affinities. Computational alanine scanning is a very useful technique that involves mutating each amino acid of the peptide in its complex with its target (MDM2 in the current study) to alanine, running short simulations on the mutated complex and computing the difference in interaction energies between the mutant peptides and the target protein (MDM2 in the current study) relative to the interaction energy of the original (wild-type) peptide and the target protein (MDM2 in the current study). We find that running multiple short simulations yield values of computed binding affinities (enthalpies) that are similar to those obtained from a long simulation and are well correlated with the trends in the data available from experiments that used Surface Plasmon Resonance to obtain dissociation constants. The p53-mimicking peptides contain three amino acids (F19, W23 and L26) that are major determinants of the interactions between the peptides and MDM2 and form an essential motif. We find in the current study that the trends amongst the contributions to experimental binding affinities of the hydrophobic residues F19, W23 and L26 are the best reproduced in all the computational protocols examined here. This study suggests that running such short simulations may provide a rapid method to redesign peptides to obtain high-affinity variants against a target protein. We further observe that modelling an extended conformation at the C-terminus of the helical PMI peptides, in accord with the conformation of the p53-peptide complexed to MDM2, reproduces the trends seen amongst the experimental affinities of the peptides that carry the alanine mutations at their C-termini. This suggests that some of the mutant peptides possibly interconvert between helical and extended states and can bind to MDM2 in either conformation. This novel feature, not obvious from the crystallographic data, if factored into modelling protocols, may yield novel high-affinity peptides. Our findings suggest that such protocols may enable rapid investigations of at least certain types of amino acid mutations, notably from large to small amino acids.