End-labeled free-solution electrophoresis of DNA

DNA is a free-draining polymer. This subtle but "unfortunate" property of highly charged polyelectrolytes makes it impossible to separate nucleic acids by free-flow electrophoresis. This is why one must typically use a sieving matrix, such as a gel or an entangled polymer solution, in order to obtain some electrophoretic size separation. An alternative approach consists of breaking the charge to friction balance of free-draining DNA molecules. This can be achieved by labeling the DNA with a large, uncharged molecule (essentially a hydrodynamic parachute, which we also call a drag-tag) prior to electrophoresis; the resulting methodology is called end-labeled free-solution electrophoresis (ELFSE). In this article, we review the development of ELFSE over the last decade. In particular, we examine the theoretical concepts used to predict the ultimate performance of ELFSE for single-stranded (ssDNA) sequencing, the experimental results showing that ELFSE can indeed overcome the free-draining issue raised above, and the technological advances that are needed to speed the development of competitive ELFSE-based sequencing and separation technologies. Finally, we also review the reverse process, called free-solution conjugate electrophoresis (FSCE), wherein uncharged polymers of different sizes can be analyzed using a short DNA molecule as an electrophoretic engine.     

Sigma meson and phonon-like excitations of the instanton vacuum

The possible nature of two experimentally observed scalar mesons that are widely spaced in mass and whose special features may be caused by the excitations of the instanton liquid considered as a model of the QCD vacuum. It is shown that mass changes in the scalar sector may prove to be unexpectably large, even though the scale of such corrections to the dynamical quark mass is relatively small.     

Hyperinstantons,the Beltrami equation,and triholomorphic maps

We consider the Beltrami equation for hydrodynamics and we show that its solutions can be viewed as instanton solutions of a more general system of equations. The latter are the equations of motion for an sigma model on 4‐dimensional worldvolume (which is taken locally HyperKähler) with a 4‐dimensional HyperKähler target space. By means of the 4D twisting procedure originally introduced by Witten for gauge theories and later generalized to 4D sigma‐models by Anselmi and Fré, we show that the equations of motion describe triholomophic maps between the worldvolume and the target space. Therefore, the classification of the solutions to the 3‐dimensional Beltrami equation can be performed by counting the triholomorphic maps. The counting is easily obtained by using several discrete symmetries. Finally, the similarity with holomorphic maps for sigma on Calabi‐Yau space prompts us to reformulate the problem of the enumeration of triholomorphic maps in terms of a topological sigma model.     

Structural characterization of AlN films synthesized by pulsed laser deposition

We obtained AlN thin films by pulsed laser deposition (PLD) from a polycrystalline AlN target using a pulsed KrF* excimer laser source (248 nm, 25 ns, intensity of ∼4 × 10⁸ W/cm², repetition rate 3 Hz, 10 J/cm² laser fluence). The target-Si substrate distance was 5 cm. Films were grown either in vacuum (10⁻⁴ Pa residual pressure) or in nitrogen at a dynamic pressure of 0.1 and 10 Pa, using a total of 20,000 subsequent pulses. The films structure was characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM) and spectral ellipsometry (SE). Our TEM and XRD studies showed a strong dependence of the film structure on the nitrogen content in the ambient gas. The films deposited in vacuum exhibited a high quality polycrystalline structure with a hexagonal phase. The crystallite growth proceeds along the c-axis, perpendicular to the substrate surface, resulting in a columnar and strongly textured structure. The films grown at low nitrogen pressure (0.1 Pa) were amorphous as seen by TEM and XRD, but SE data analysis revealed ∼1.7 vol.% crystallites embedded in the amorphous AlN matrix. Increasing the nitrogen pressure to 10 Pa promotes the formation of cubic (≤10 nm) crystallites as seen by TEM but their density was still low to be detected by XRD. SE data analysis confirmed the results obtained from the TEM and XRD observations.     

Elliptic functions and equations of modular curves

Let be a prime. We show that the space of weight one Eisenstein series defines an embedding into ${mathbb P}^{(p-3)/2}X_1(p)$ for the congruence group that is scheme-theoretically cut out by explicit quadratic equations. Received: 8 November 2000 / Published online: 17 August 2001     

A Possibilistic Approach of the Max-Product Bernstein Kind Operators

By analogy with the probabilistic approach of the classical Bernstein polynomials, in this paper firstly we give the proof for the uniform convergence of the nonlinear max-product Bernstein operator by using the theory of possibility. This new approach, which interprets the max-product Bernstein operator as a possibilistic expectation of a particular fuzzy variable having a possibilistic Bernoulli distribution, does not only offer a good justification for the max-product Bernstein operator, but also allows to extend the method to other discrete max-product Bernstein type operators.     

Detonability of THDCPD-exo–air mixtures

In the frame of industrial risk and propulsive application, the detonability study of JP10–air mixtures was performed. The simulation and measurements of detonation parameters were performed for THDCPD-exo/air mixtures at various initial pressure (1 bar < P ₀ < 3 bar) and equivalence ratio (0.8 < Φ < 1.6) in a heated tube (T ₀ ~ 375 K). Numerical simulations of the detonation were performed with the STANJAN code and a detailed kinetic scheme of the combustion of THDCPD. The experimental study deals with the measurements of detonation velocity and cell size λ. The measured velocity is in a good agreement with the calculated theoretical values. The cell size measurements show a minimum value for Φ ~ 1.2 at every level of initial pressure studied and the calculated induction length L _i corresponds to cell size value with a coefficient k = λ/L _i = 24 at P ₀ = 1 bar. Based on the comparison between the results obtained during this study and those available in the literature on the critical initiation energy E _c, critical tube diameter d _c and deflagration to detonation transition length L _DDT, we can conclude that the detonability of THDCPD–air mixtures corresponds to that of hydrocarbon–air mixtures.

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This paper is based on the work presented at the 33rd International Pyrotechnics Seminar, IPS 2006, Fort Collins, July 16–21, 2006.     

Synthesis and Stereochemistry of Novel Dibrominated 1,5-Dioxaspiro[5.5]undecane Derivatives

 The synthesis and stereochemistry of new dibrominated spiro-1,3-dioxane derivatives are reported. Investigations by means of NMR methods and single crystal X-ray diffraction for two compounds revealed the high regio- and diastereoselectivity of the bromination reaction of some new spiro-1,3-dioxanes and the asymmetric induction of the chiral carbon atom located in the spiro skeleton.