Pharmacophore elucidation and 3D-QSAR analysis of a new class of highly potent inhibitors of acid ceramidase based on maximum common substructure and field fit alignment methods

Comparative molecular field analysis (CoMFA) and comparative similarity indices analysis (CoMSIA) studies have been carried on a series of 2,4-dioxopyrimidine-1-carboxamides as acid ceramidase inhibitors. Two alignment rules for the compounds were defined using maximum common substructure and field fit. The best orientation was then searched by all-orientation search strategy, to minimize the effect of the initial orientation of the structures. The Kennard Stone algorithm was used to divide the entire set into training (25 compounds) and test (7 compounds) sets. Pharmacophore model identification was also performed using DISCOtech algorithm and refinement was carried out using GASP, to highlight important structural features that could be responsible for the inhibitory activity. All constructed models showed appropriate statistical parameters in terms of q ² and r _pred ² . Based upon the information obtained from CoMFA, CoMSIA, and developed pharmacophore pattern, some key features that may be used to design new inhibitors for acid ceramidase have been identified.     

Synthesis of graphene oxide nanosheets and its application to construct a modified carbon paste electrode as a hydroxylamine electrochemical sensor

Ionics - A ferrocene-derivative compound, 2, 7-bis (ferrocenyl ethynyl) fluoren-9-one (2,7-BFE), was synthesized and used to construct a modified graphene paste electrode. The electrooxidation of...     

Rice Husk Ash: A New,Cheap, Efficient,and Reusable Reagent for the Protection of Alcohols,Phenols, Amines,and Thiols

Abstract

A mild, efficient, and eco-friendly protocol for the protection of alcohols and phenols as trimethylsilyl ethers has been developed using rice husk ash as a reagent. This reagent is also able to catalyze the acetylation of alcohols, phenols, thiols, and amines with acetic anhydride. All reactions were performed under mild conditions in good to high yields.

[Supplementary materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements for the following free supplemental files: Additional text, tables, and figures.]     

Targeting human c-Myc promoter duplex DNA with actinomycin D by use of multi-way analysis of quantum-dot-mediated fluorescence resonance energy transfer

Actinomycin D (Act D), an oncogenic c-Myc promoter binder, interferes with the action of RNA polymerase. There is great demand for high-throughput technology able to monitor the activity of DNA-binding drugs. To this end, binding of 7-aminoactinomycin D (7AAD) to the duplex c-Myc promoter was investigated by use of 2D-photoluminescence emission (2D-PLE), and the resulting data were subjected to analysis by use of convenient and powerful multi-way approaches. Fluorescence measurements were performed by use of the quantum dot (QD)-conjugated c-Myc promoter. Intercalation of 7AAD within duplex base pairs resulted in efficient energy transfer from drug to QD via fluorescence resonance energy transfer (FRET). Multi-way analysis of the three-way data array obtained from titration experiments was performed by use of restricted Tucker3 and hard trilinear decomposition (HTD). These techniques enable analysis of high-dimensional and complex data from nanobiological systems which include several spectrally overlapped structures. It was almost impossible to obtain robust and meaningful information about the FRET process for such high overlap data by use of classical analysis. The soft approach had the important advantage over univariate classical methods of enabling us to investigate the source of variance in the fluorescence signal of the DNA–drug complex. It was established that hard trilinear decomposition analysis of FRET-measured data overcomes the problem of rank deficiency, enabling calculation of concentration profiles and pure spectra for all species, including non-fluorophores. The hard modeling approach was also used for determination of equilibrium constants for the hybridization and intercalation equilibria, using nonlinear fit data analysis. The intercalation constant 3.6?×?10⁶ mol^?1 L and hybridization stability 1.0?×?10⁸ mol^?1 L obtained were in good agreement with values reported in the literature. The analytical concentration of the QD-labeled DNA was determined by use of nonlinear fitting, without using external standard calibration samples. This study was a successful application of multi-way chemometric methods to investigation of nano-biotechnological systems where several overlapped species coexist in solution.

Rice husk: A mild,efficient, green and recyclable catalyst for the synthesis of 12-Aryl-8, 9, 10, 12-tetrahydro [a] xanthene-11-ones and quinoxaline derivatives

Rice husk, as a green and cheap reagent, can be used for the promotion of the synthesis of 12-aryl -8, 9,10,12-tetrahydrobenzo[α] xanthen-11-one derivatives (ATXOs) via three-component reaction of aldehydes, 2-naphthol and 5,5-dimethyl-1,3-cyclohexadione (dimedone) under solvent-free conditions. This catalyst can also be used for the preparation of quinoxaline derivatives in a mixture of H₂O and CH₃CN at 50 °C. The present methodology offers several advantages such as high yields, simple procedure, low cost, short reaction times, mild reaction conditions and use of a green, cheap and reusable catalyst.     

Substituent effects on novel diaminovinylidenes by DFT

Research on Chemical Intermediates - Electronic and steric effects on singlet and triplet symmetric 2,4-diX-vinylidenes with acyclic, cyclic-saturated, and cyclic-unsaturated structures are...     

基于纳米结构的电化学传感器用于伏安法测定苄丝肼、尿酸和叶酸(英文)

A carbon paste electrode modified with carbon nanotubes and ferrocene was fabricated.An electrochemical study of the modified electrode and an investigation into its efficiency for the electrocatalytic oxidation of benserazide,uric acid and folic acid were undertaken.The electrode was also used to study the electrocatalytic oxidation of benserazide using cyclic voltammetry,chronoamperometry,and square wave voltammetry(SWV).We found that the oxidation of benserazide at the surface of the modified electrode occurs at a potential about 285 mV lower than that of unmodified carbon paste electrode.SWV gave a linear dynamic range from 8.0×10-7 to 7.0×10 4 mol/L.The detection limit was 1.0×10-7 mol/L for benserazide.This modified electrode was used for the determination of benserazide,uric acid,and folic acid in an urine sample.     

对乙酞氨基酚和色氨酸存在下采用改进的碳纳米管糊电极伏安法测定抗坏血酸(英文)

A carbon paste electrode (CPE) modified with carbon nanotubes and 5‐amino‐3’,4’‐dimethyl‐ bi‐ phenyl‐2‐ol (5ADB) is prepared. Under the optimum pH of 7.0, the oxidation of ascorbic acid (AA) on the modified CPE occurs at a potential about 280 mV less positive than that on the unmodified CPE. Some kinetic and thermodynamic parameters for electrocatalytic oxidation of AA, including electron transfer coefficient (α = 0.58) and diffusion coefficient (D = 2.2 × 10-6 cm2/s), are also determined. AA, acetaminophen (AC), and tryptophan (TRP) were detected simultaneously using the modified CPE. The peak potentials recorded using the modified CPE in phosphate‐buffered solution at pH 7.0 were 265, 465, and 780 mV for AA, AC, and TRP, respectively. The modified CPE was successfully used to determine the concentrations of AA, AC, and TRP in real samples.     

‘Click Synthesis’ of 1H‐1,2,3‐Triazolyl‐Based Oxiconazole (=(1Z)‐1‐(2,4‐Dichlorophenyl)‐2‐(1H‐imidazol‐1‐yl)ethanone O‐[(2,4‐Dichlorophenyl)methyl]oxime) Analogs

The ‘click synthesis’ of some oxiconazole analogs 5a – 5v having 1H‐1,2,3‐triazolyl residues by Huisgen cycloaddition was achieved in four steps (Scheme 1). Oximation of phenacyl chloride ( 1 ) followed by azidation of 2‐chloro‐1‐phenylethanone oxime ( 2 ) provided azido ketoxime 3 . The CuI‐catalyzed Huisgen cycloaddition of 3 with terminal alkynes gave the 4‐substituted (at the triazole) 2‐(1H‐1,2,3‐triazol‐1‐yl)‐1‐phenylethanone oximes 4a – 4i . The O‐alkylation of 4a – 4i with various alkyl halides resulted in the formation of the target molecules 5a – 5v in good yields.     

New method for microextraction of ultra trace quantities of gold in real samples using ultrasound-assisted emulsification of solidified floating organic drops

A method was developed for the determination of gold ion in water samples using microextraction based on the ultrasound-assisted emulsification of solidified floating organic drops, followed by the flame atomic absorption spectrometry. N-(4-{4-[(anilinocarbothioyl)amino]benzyl}phenyl)-N-phenylthiourea was used as chelating agent. The parameters affecting the extraction and complex formation (including the type and volume of the extracting solvent, time of sonication and centrifugation, pH, amount of the chelating agent, and sample ionic strength) were optimized. Under the optimum conditions, the calibration graph is linear in the range from 1.5 to 400 ng mL^?1, with a limit of detection of 0.45 ng mL^?1. The relative standard deviation for ten replicate determinations of gold ion in a concentration of 175 ng mL^?1 was 1.7%. The procedure was successfully applied to the determination of gold in water samples, in pharmaceutical and synthetic samples, and in a standard reference material.