Inter- and intrastrand DNA crosslinks by 2-fluoro-substituted pyrrolobenzodiazepine dimers: stability, stereochemistry and drug orientation

A 2-fluoro-substituted pyrrolo[2,1-c][1,4]benzodiazepine (PBD) dimer with a 1,4-di-n-propyl piperazine linker was studied with respect to its binding and crosslinking capability towards double-helical DNA targets. Duplex thermal stabilizations upon drug binding as measured by UV melting experiments suggest that two guanine bases separated by four AT base pairs constitute the favorable binding site for the PBD dimer. Large stabilizations were observed for the self-complementary duplex d(AACAATTGTT)(2) as well as for the non-self-complementary duplex d(AAGAATTGTT)·d(AACAATTCTT) with both guanines located on the same strand. Formation of interstrand and intrastrand crosslinks by the covalent binding of both PBD moieties of the dimer to the exocyclic 2-amino group of the two guanine bases within the duplex minor groove was confirmed by NMR structural studies. In both the symmetric and non-symmetric DNA-PBD adducts the newly created stereogenic center at C11 of the tricyclic PBD subunits favors an S configuration. Different orientations of the PBD aromatic A-ring with respect to the covalently modified guanine as observed in the non-symmetric complex are shown to result in characteristic changes of PBD H11 and H11a proton chemical shifts. Based on a compilation of available NMR data on various PBD complexes, these differences may be used as valuable probes for the identification of PBD orientational preferences in DNA-PBD adducts.     

Magnetic and structural studies on CoFe2O4 nanoparticles synthesized by co-precipitation,normal micelles and reverse micelles methods

Cobalt ferrite nanoparticles were synthesized by the chemical co-precipitation, normal micelles and reverse micelles methods of iron and cobalt chlorides. X-ray diffraction analysis, Fourier Transform Infrared (FTIR) and Vibrating Sample Magnetometer were carried out at room temperature to study the structural and magnetic properties. X-ray patterns revealed the production of a broad single cubic phase with the average particle sizes of ∼12 nm, 5 nm and 8 nm for co-precipitation, normal micelles and reverse micelles methods, respectively. The FTIR measurements between 400 and 4000 cm⁻¹ confirmed the intrinsic cation vibrations of spinel structure for each one of the three methods. Moreover, the average particle sizes were lower than the single domain size (128 nm) and higher than the super-paramagnetic size (2–3 nm) at room temperature. The results revealed that the magnetic properties depend on the particle size and cation distribution, whereas the role of particle size is more significant.     

Nanostructural,magnetic and Mössbauer studies of nanosized Co1−xZnxFe2O4 synthesized by co-precipitation

This work presents a systematic investigation on the structural and magnetic properties of Co_1−xZn_xFe₂O₄ (0.5<x<0.75) nanoparticles synthesized by the chemical co-precipitation method. The X-ray diffraction analysis, the Fourier Transform Infrared (FTIR) and the Vibrating Sample Magnetometer were carried out at room temperature to study the micro-structural and magnetic properties. The X-ray measurements revealed the production of a broad single cubic phase with the crystallite size within the range of 6–10 nm. The FTIR measurements between 400 and 4000 cm⁻¹ confirmed the intrinsic cation vibrations of the spinel structure. The magnetic measurements show that the saturation magnetization and coercivity decrease by increasing the zinc content. Furthermore, the results reveal that the sample with a chemical composition of Co_0.3Zn_0.7Fe₂O₄ exhibits the super-paramagnetic behavior and the Curie point of 97 °C.     

Solution methods to the nearest rotation matrix problem in ℝ3: A comparative survey

Nowadays, the singular value decomposition (SVD) is the standard method of choice for solving the nearest rotation matrix problem. Nevertheless, many other methods are available in the literature for the 3D case. This article reviews the most representative ones, proposes alternative ones, and presents a comparative analysis to elucidate their relative computational costs and error performances. This analysis leads to the conclusion that some algebraic closed-form methods are as robust as the SVD, but significantly faster and more accurate.