Numerical simulation of DNA sample preconcentration in microdevice electrophoresis

A numerical model is presented for the accurate and efficient prediction of preconcentration and transport of DNA during sample introduction and injection in microcapillary electrophoresis. The model incorporates conservation laws for the different buffer ions, salt ions, and DNA sample, coupled through a Gaussian electric field to account for the field modifications that cause electromigration. The accuracy and efficiency required to capture the physics associated with such a complex transient problem are realized by the use of the finite element-flux corrected transport (FE-FCT) algorithm in two dimensions. The model has been employed for the prediction of DNA sample preconcentration and transport during electrophoresis in a double-T injector microdevice. To test its validity, the numerical results have been compared with the corresponding experimental data under similar conditions, and excellent agreement has been found. Finally, detailed results from a simulation of DNA sample preconcentration in electrophoretic microdevices are presented using as parameters the electric field strength and the other species concentrations. The effect of the Tris concentration on sample stacking is also investigated. These results demonstrate the great potential offered by the model for future optimization of such microchip devices with respect to significantly enhanced speed and resolution of sample separation.     

The system K2SO4-K2S

A new experimental technique has been developed to determine the phase equilibrium diagram for the system K₂SO₄-K₂S.The technique involves isothermal thermogravimetry of potassium sulphate during reduction to potassium sulphide at elevated temperatures in a stream of dry oxygen-free hydrogen gas. Several abrupt changes in the rate of weight loss occur in each curve and these can be related to phase changes in the phase diagram for the system.On the basis of such results the liquidus and solidus (solid solution) boundaries can be located.Simple thermal analysis is used to confirm the eutectic temperature and various liquidus temperatures.The diagram K₂SO₄-K₂S is a simple eutectic system with the eutectic at 610 and 23 mole % K₂S. The limits of solid solubility of K₂S in K₂SO₄ and K₂SO₄ in K₂S at the eutectic temperature are 11 % and 36 mole% respectively.The odd shape of the liquidus curves on each side of the eutectic suggests the possibility of phase changes in both K₂SO₄ and K₂S solid solutions. No evidence for this was obtained from thermal analysis.

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Zusammenfassung Eine neue experimentelle Technik wurde zur Bestimmung des Phasengleichgewichtsdiagramms des Systems K₂SO₄-K₂S entwickelt.Die Technik umfasst die isotherme Gravimetrie von Kaliumsulfat wÄhrend der Reduktion zu Kaliumsulfid bei erhöhten Temperaturen in strömenden trockenen und Sauerstoff-freien Wasserstoff. Verschiedene plötzliche Änderungen der Geschwindigkeit des Gewichtsverlustes treten bei jeder Kurve auf und können mit den PhasenÄnderungen im Phasendiagramm des Systems in Zusammenhang gebracht werden.Durch diese Ergebnisse können die GrenzflÄchen der flüssigen und der Festphasenlösung festgestellt werden.Die einfache Thermoanalyse wird zur BestÄtigung der eutektischen Temperatur und verschiedener Liquidus-Temperaturen herangezogen.Das Diagramm K₂SO₄-K₂S ist ein einfaches eutektisches System mit dem Eutektikum bei 610 und 23 Mol % K₂S. Die Grenzwerte einer festen Lösung von K₂S in K₂SO₄ und K₂SO₄ in K₂S betragen bei der eutektischen Temperatur 11% bzw. 36 Mol %.Die aussergewöhnliche Form der Liquidus-Kurven zu beiden Seiten des Eutektikums lÄsst auf die Möglichkeit von PhasenÄnderungen in den Festlösungen von sowohl K₂SO₄ wie auch von K₂S schliessen Hierzu ergab jedoch die Thermoanalyse keine BestÄtigung.

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Résumé Une nouvelle technique expérimentale a été développée afin de déterminer le diagramme d'équilibre des phases dans le système K₂SO₄-K₂S.La technique fait appel à la thermogravimétrie isotherme du sulfate de potassium lors de sa réduction en sulfure de potassium à températures élevées dans un courant de gaz hydrogène sec exempt d'oxygène. Plusieurs changements abrupts de vitesse de perte de poids ont lieu sur chaque courbe et ces changements peuvent Être rapportés aux changements de phases dans le diagramme de phases du système.A partir de tels résultats on peut déterminer les limites du liquidus et du solidus (solution solide).L'analyse thermique simple a été utilisée pour confirmer la température eutectique etdiverses températures du liquidus.Le diagramme K₂SO₄-K₂S forme un système eutectique simple à 610 et 23 p.c. molaires de K₂S. Les limites de la solubilité en phase solide de K₂S dans K₂SO₄ et de K₂SO₄ dans K₂S sont, à la température eutectique, respectivement de 11 et 36 mol %.La forme particulière des courbes du liquidus de chaque cÔté de l'eutectique fait penser à la possibilité de changements de phases dans les solutions solides tant de K₂SO₄ que de K₂S, mais l'analyse thermique n'en a pas donné de preuve.

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K₂SO₄-K₂S . , . , . ( ). . K₂SO₄-K₂S 610 23% K₂S. K₂S K₂SO₄ K₂SO₄ K₂S , , 11 36 . K₂SO₄ K₂S . , .

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The authors would like to thank the National Research Council of Canada for their financial support.     

Role of sphingomyelin-MAPKs pathway in heat-induced apoptosis

The role of sphingomyelinase (SMase) activation and mitogen activated protein kinases (MAPKs) activation in cellular apoptosis was investigated during the hyperthermic treatment of HL-60 human leukemia cells. Treating the cells for 1 h at 43(o)C caused more than 50% of cellular apoptosis within several hours. The neutral-SMase activity in the cells treated for 1 h at 42(o)C was slightly increased but decreased in the cells treated at 43(o)C or 44(o)C for the same period whereas the acid SMase activity was slightly increased after heating the cells at 42(o)C and 43(o)C and markedly increased at 44(o)C for 1 h. Treatment of cells with inhibitors of SMase activation and ceramide formation significantly reduced the heat-induced apoptosis. Three major families of mitogen-activated protein kinases (MAPKs), i.e. ERK1/2, p38 and JNK, were activated by the hyperthermic treatment of cells. Inhibition of ERK1/2 with PD98059 exerted little effect on the heat-induced apoptosis and p38 inhibition with SB203580 slightly lessened apoptosis whereas, inhibition of JNK with SP600125 markedly suppressed the heat-induced apoptosis. These results indicate that heat-shock induced the activation of SMase, particularly acid-SMase, thereby causing apoptosis and that JNK played a pivotal role in heat-induced apoptosis in HL-60 leukemia cells.     

Changes in Isoflavone Profile from Soybean Seeds during Cheonggukjang Fermentation Based on High-Resolution UPLC-DAD-QToF/MS: New Succinylated and Phosphorylated Conjugates

In this study, thirty-eight isoflavone derivatives were comprehensively identified and quantified from the raw, steamed and fermented seeds of four selected soybean cultivars based on UPLC-DAD-QToF/MS results with reference to the previously reported LC-MS library and flavonoid database, and summarized by acylated group including glucosides (Glu), malonyl-glucosides (Mal-Glu), acetyl-glucosides (Ac-Glu), succinyl-glucosides (Suc-Glu) and phosphorylated conjugates (Phos) in addition to aglycones. Among them, Suc-Glu and Phos derivatives were newly generated due to fermentation by B. subtilis AFY-2 (cheonggukjang). In particular, Phos were characterized for the first time in fermented soy products using Bacillus species. From a proposed roadmap on isoflavone-based biotransformation, predominant Mal-Glu (77.5–84.2%, raw) decreased rapidly by decarboxylation and deesterification into Ac-Glu and Glu (3.5–8.1% and 50.0–72.2%) during steaming, respectively. As fermentation continued, the increased Glu were mainly succinylated and phosphorylated as well as gradually hydrolyzed into their corresponding aglycones. Thus, Suc-Glu and Phos (17.3–22.4% and 1.5–5.4%, 36 h) determined depending on cultivar type and incubation time, and can be considered as important biomarkers generated during cheonggukjang fermentation. Additionally, the changes of isoflavone profile can be used as a fundamental report in applied microbial science as well as bioavailability research from fermented soy foods.     

Electronic structure and properties of oxide glasses (II) Basicity measured by copper(II) ion probe in Na2OP2O5, K2OB2O3 and K2SO4ZnSO4 glasses

The correlation between the basicity of oxygens measured by the Cu(II) ion probe and the non-bonding electron density on oxygens in alkali borate glasses was considered. The basicity was measured for K₂OB₂O₃, Na₂OP₂O₅ and K₂SO₄ZnSO₄ glasses and categorized into two types, δ and π, according to the symmetry property of the bonding between a Cu(II) ion and oxygen. The π basicity for borate and phosphate glasses showed an abrupt increase in the vicinity of 17 and 50 mol% alkali oxide, respectively. The values of π-type basicity varied with the composition of glass, being larger in the order: sulfate < phosphate ? borate, whereas δ basicity was constant irrespective of the glass composition. Such a change of the basicity with the composition of glass was interpreted in terms of behavior of non-bonding levels of the ligand oxygens in a glass network.     

Palladium-catalyzed chemoselective direct α-arylation of carbonyl compounds with chloroaryl triflates at the C–Cl site

This study described palladium-catalyzed chemoselective direct α-arylation of carbonyl compounds with chloroaryl triflates in the Ar–Cl bond. The Pd/SelectPhos system showed excellent chemoselectivity toward the Ar–Cl bond in the presence of the Ar–OTf bond with a broad substrate scope and excellent product yields. The electronic and steric hindrance offered by the –PR₂ group of the ligand with the C2-alkyl group was found to be the key factor affecting the reactivity and chemoselectivity of the α-arylation reaction. The chemodivergent approach was also successfully employed in the synthesis of flurbiprofen and its derivatives (e.g., –OMe and –F).

Palladium-catalyzed chemoselective direct α-arylation of carbonyl compounds with chloroaryl triflates in the Ar–Cl bond is reported. The effects of –PR₂ and C2-alkyl groups of the ligands are investigated using experimental and computational methods.     

Investigation on the stress behavior of cellulose acetate and the development of highly moisture‐resistant optical films for display devices

An optical film with high optical anisotropy was prepared by the stretching of a cellulose acetate film and the consequential orienting of a retardation‐enhancing additive. The change in retardation in response to moisture absorption was explored and it was found that the degree of the retardation variation is strongly related to the stretching temperature. Stress generated by the stretching and its relaxation was systematically investigated to elucidate the effect of stretching temperature on the irreversible change in retardation upon moisture absorption. The results show that the magnitude of releasable stress plays an important role in controlling changes in optical properties. In addition, the difference in the deformation behavior between glassy and rubbery states should be taken into account in the development of a moisture‐resistant optical film. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 1470–1478     

Expedient and Diastereodivergent Assembly of Terpenoid Decalin Subunits having Quaternary Stereocenters through Organocatalytic Robinson Annulation of Nazarov Reagent

We report an expedient approach to highly functionalized cis‐ and trans‐decalines that could function as key structural subunits toward the synthesis of various classes of terpenoids. Key to the strategy is an organocatalyzed Robinson annulation reaction of the Nazarov reagent that affords chiral enone building blocks with high enantioselectivities. The quaternary carbon stereogenic center can direct the subsequent reactions and allow the rapid and diastereoconvergent assembly of complex decalines with contiguous stereocenters.     

Cationic addition polymerization of 1,4‐dioxene using gacl3 as lewis acid catalyst: Long‐lived species‐mediated polymerization

Effective cationic addition polymerization of 1,4‐dioxene, a six‐membered cyclic olefin with two oxygen atoms adjacent to the double bond, was performed using a simple metal halide catalyst system in dichloromethane. The polymerization was controlled when the reaction was conducted using GaCl₃ in conjunction with an isobutyl vinyl ether–HCl adduct as a cationogen at –78°C to give polymers with predetermined molecular weights and relatively narrow molecular weight distributions. The long‐lived properties of the propagating species were further confirmed by a monomer addition experiment and the analyses of the product polymers by ¹H NMR and MALDI–TOF–MS. Although highly clean propagation proceeded, the apparent rate constant changed during the controlled cationic polymerization of 1,4‐dioxene. The reason for the change was discussed based on polymerization results under various conditions. The obtained poly(1,4‐dioxene) exhibited a very high glass transition temperature (T_g) of 217°C and unique solubility. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Living cationic polymerization of vinyl ethers with a naphthyl group: Decisive effect of the substituted position on naphthalene ring

Living cationic polymerization of a vinyl ether with a naphthyl group [2‐(2‐naphthoxy)ethyl vinyl ether, βNpOVE] was achieved using base‐assisting initiating systems with a Lewis acid. The Et_1.5AlCl_1.5/1,4‐dioxane or ethyl acetate system induced the living cationic polymerization of βNpOVE in toluene at 0 °C. The living nature of this reaction was confirmed by a monomer addition experiment, followed by ¹H NMR and matrix‐assisted laser desorption ionization time‐of‐flight mass spectrometry (MALDI‐TOF‐MS) analyses. In contrast, the polymerization of αNpOVE was not fully controlled; under similar conditions, it produced polymers with broad molecular weight distributions. The ¹H NMR and MALDI‐TOF‐MS spectra of the resultant poly(αNpOVE) revealed that the products had undesirable structures derived from Friedel–Crafts alkylation. The higher reactivity of αNpOVE in electrophilic substitution reactions, such as the Friedel–Crafts reaction, was attributable to the greater electron density of the naphthyl ring, which was calculated based on frontier orbital theory. The naphthyl groups significantly affected the properties of the resultant polymer. For example, the glass transition temperatures (T_g) of poly(NpOVE)s are higher by approximately 40 °C than that of poly(2‐phenoxyethyl vinyl ether). © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012