STM studies of fusion of cholesterol suspensions and mixed 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC)/cholesterol vesicles onto a Au(111) electrode surface

Electrochemical scanning tunneling microscopy (EC-STM) has been applied to study the structure of the film formed by fusion of cholesterol suspensions and mixed dimyristoylphosphatidylcholine (DMPC)/cholesterol vesicles on a Au(111) electrode surface. It has been demonstrated that cholesterol molecules assemble at the gold support into several structures templated by the crystallography of the metal surface and involving flat or edge-on adsorbed molecules. Studies of the film formed by fusion of mixed DMPC/cholesterol vesicles revealed that ordered domains of either pure DMPC or pure cholesterol were formed. These results indicate that, at the metal surface, the molecules released by the rupture of a vesicle initially self-assemble into a well-ordered monolayer. The self-assembly is controlled by the hydrocarbon skeleton-metal surface interaction. In the case of mixed DMPC/cholesterol vesicles, the molecule-metal interactions induce segregation of the two components into single component domains. However, the molecule-metal interaction induced monolayer is a transient phenomenon. When more molecules accumulate at the surface, the molecule-molecule interactions dominate the assembly, and the monolayer is transformed into a bilayer.     

Mechanistic Studies on the Stereoselectivity of the Serotonin 5‐HT1A Receptor

G‐protein‐coupled receptors (GPCRs) are involved in a wide range of physiological processes, and they have attracted considerable attention as important targets for developing new medicines. A central and largely unresolved question in drug discovery, which is especially relevant to GPCRs, concerns ligand selectivity: Why do certain molecules act as activators (agonists) whereas others, with nearly identical structures, act as blockers (antagonists) of GPCRs? To address this question, we employed all‐atom, long‐timescale molecular dynamics simulations to investigate how two diastereomers (epimers) of dihydrofuroaporphine bind to the serotonin 5‐HT_1A receptor and exert opposite effects. By using molecular interaction fingerprints, we discovered that the agonist could mobilize nearby amino acid residues to act as molecular switches for the formation of a continuous water channel. In contrast, the antagonist epimer remained firmly stabilized in the binding pocket.     

How many electrons form chemical bonds in the NgBeS (Ng = Ar,Kr, Xe) molecules? Topological study using the electron localisation function (ELF) and electron localisability indicator (ELI-D)

Nature of bonding in the NgBeS (Ng = Ar, Kr, Xe) molecules has been studied using topological analysis of ELF, ELI-D functions with the wave function approximated at the DFT (M062X, B3LYP + ZORA), MP2, CCSD and CASSCF level of calculations. Both Xe–Be and Be=S bonds display topological features typical for the covalent-dative bonding. The V₂(Xe) attractor characterising electron density, involved in interaction with the beryllium atom, is closer to the C(Be) core than to C(Xe). The population of the respective basin ranges between 1.59e (B3LYP + ZORA) and 1.83e (CCSD). The beryllium–sulphur bond is described by the bonding disynaptic basin V(Be,S) with the population between 3.22e (CASSCF) and 3.48e (M062X). The approximate weights for the Be–S and Be=S resonance forms are 0.3 and 0.7, respectively, in all molecules. Both the NgBe and BeS bonds are highly polarised with the values of the p _SBe and p _NgBe polarity indices (CCSD) of 0.8 and 0.9–1.0 for all studied molecules.     

Cathodic reduction of coenzyme Q10 on glassy carbon electrode in acetic acid-acetonitrile solutions

The electrochemical reduction of coenzyme CoQ(10) and CoQ(0) on glassy carbon (GC) has been investigated in mixed solvent containing 80 vol.% acetic acid and 20 vol.% acetonitrile. A combination of cyclic voltammetry (CV) and rotating disk electrode technique (RDE) was employed to elucidate the mechanism of electrode processes. The results obtained were interpreted in terms of an E(r)E(q) mechanism involving the inverted ordering of formal potentials, i.e. E(2)(0')>E(1)(0'). The cathodic processes of both compounds consist of two successive one-electron one-proton steps, whereas the second electron transfer is thermodynamically more facile than the first. The processes occur with the generation of unstable semiquinone radicals as primary products. The results presented can help in explanation of the biochemical properties of CoQ(10) in the living cell.     

Photochemical and thermal reactions of intermediates in the phenylnitrene rearrangement inside a hemicarcerand

Broadband irradiation (lambda > 320 nm) of hemicarceplex H(.)1 between -74 degrees C and -84 degrees C, produces encapsulated didehydroazepine (2), triplet phenylnitrene ((3)PN), 2-azabicyclo[3.2.0]hepta-1,3,6-triene (6), and 4-azaspiro[2.4]hepta-1,4,6-triene (7). The highly strained anti-Bredt imine 6 is formed from 2 via a photochemical four-electron electrocyclization. Under the irradiation conditions, 6 rearranges further to azaspirene 7. In addition, 6 thermally rearranges to 7 via a 1,5-sigmatropic shift (DeltaG(267K) = 20.0 +/- 0.5 kcal/mol), yielding a final equilibrium composed of [7]/[6] = 5 at room temperature. The observation of a photochemical rearrangement of 2 to 6 contrasts earlier results of narrow band irradiations (lambda = 334 nm) of matrix-isolated 2, which gave (3)PN (Hayes, J. C.; Sheridan, R. S. J. Am. Chem. Soc. 1990, 112, 5879-5881). Encapsulated (3)PN is remarkably stable due to the prevention of its dimerization by the surrounding hemicarcerand. Above 255 K, it slowly decays with a rate constant k = 10(7.7+/-0.4) s(-1) x exp {(13300 +/- 500 cal/mol)/RT}. The isolation of substantial amounts of a hemicarcerand lacking one acetal spanner suggests that (3)PN decays preferentially by inserting into an inward-pointing acetal C-H bond of H.     

On regularization of plurisubharmonic functions on manifolds

We study the question of when a -plurisubharmonic function on a complex manifold, where is a fixed -form, can be approximated by a decreasing sequence of smooth -plurisubharmonic functions. We show in particular that it is always possible in the compact Kähler case.

     

Direct conversion of secondary phosphine oxides and H‐phosphinates with [Di(acyloxy)iodo]benzenes to phosphinic and phosphonic amides

The reaction of [di(acyloxy)iodo]benzene with secondary phosphine oxides or H‐phosphinates in the presence of primary or secondary amines allows one to obtain phosphinic or phosphonic acids amides in the one‐pot process. We take advantage of the strong acylating system DAIB/R₂P(O)H to phosphinylation of amines. However, the reaction mechanism is multipathway and causes yields of phosphinic or phosphonic acids amides to be moderate. When the concentration of amines is low, the intermolecular process plays a main role leading to the formation of carboxylic amides through mixed phosphoric–carboxylic anhydride, and also in the low concentration of amines, tetrahydrofuran effectively competes with the amines in the nucleophilic attack on the acylating intermediates. © 2009 Wiley Periodicals, Inc. Heteroatom Chem 20:81–86, 2009; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20514     

Synthesis and EPR Studies of 2′‐Deoxyuridines with Alkynyl,Rodlike Linkages

Sonogashira coupling of diacetyl 5‐ethynyl‐2′‐deoxyuridine with diacetyl 5‐iodo‐2′‐deoxyuridine gave the acylated ethynediyl‐linked 2′‐deoxyuridine dimer ( 3 b ; 63 %), which was deprotected with ammonia/methanol to give ethynediyl‐linked 2′‐deoxyuridines ( 3 a ; 79 %). Treatment of 5‐ethynyl‐2′‐deoxyuridine ( 1 a ) with 5‐iodo‐2′‐deoxyuridine gave the furopyrimidine linked to 2′‐deoxyuridine (78 %). Catalytic oxidative coupling of 1 a (O₂, CuI, Pd/C, N,N‐dimethylformamide) gave butadiynediyl‐linked 2′‐deoxyuridines ( 4 ; 84 %). Double Sonogashira coupling of 5‐iodo‐2′‐deoxyuridine with 1,4‐diethynylbenzene gave 1,4‐phenylenediethynediyl‐bridged 2′‐deoxyuridines ( 5 ; 83 %). Cu‐catalyzed cycloisomerization of dimers 4 and 5 gave their furopyrimidine derivatives. One‐electron addition to 1 a , 3 a , and 4 gave the anion radical, the EPR spectra of which showed that the unpaired electron is largely localized at C6 of one uracil ring (17 G doublet) at 77 K. The EPR spectra of the one‐electron‐oxidized derivatives of ethynediyl‐ and butadiynediyl‐linked uridines 3 a and 4 at 77 K showed that the unpaired electron is delocalized over both rings. Therefore, structures 3 a and 4 provide an efficient electronic link for hole conduction between the uracil rings. However, for the excess electron, an activation barrier prevents coupling to both rings. These dimeric structures could provide a gate that would separate hole transfer from electron transport between strands in DNA systems. In the crystal structure of acylated dimer 3 b , the bases were found in the anti position relative to each other across the ethynyl link, and similar anti conformation was preserved in the derived furopyrimidine–deoxyuridine dinucleoside.     

Nuclear-spin relaxation in nonrigid molecules: discrete multisite local dynamics combined with anisotropic molecular reorientation

Nuclear-spin relaxation is considered in a molecular system undergoing two types of dynamic processes: asymmetric-top small-step rotational diffusion and discrete multisite local jumps. The two processes are assumed to be uncorrelated. Time correlation functions for relevant rank-two interactions and corresponding spectral density functions are derived for a general relation between the characteristic rate constants. In addition, limiting cases of fast and slow local motions and of some specific jump conditions are also investigated.     

Iterative operations on microdroplets and continuous monitoring of processes within them; determination of solubility diagrams of proteins

We demonstrate a technique for controlling the content of multiple microdroplets in time. We use this system to rapidly and quantiatively determine the solubility diagrams of two model proteins (lysozyme and ribonuclease A).