Molecular dynamics simulations of the effects of carbon dioxide on the interfacial bonding of polystyrene thin films

Fabrication of nanoscale polymer‐based devices, especially in biomedical applications, is a challenging process due to requirements of precise dimensions. Methods that involve elevated temperature or chemical adhesives are not practicable due to the fragility of the device components and associated deformation. To effectively fabricate devices for lab‐on‐a‐chip or drug delivery applications, a process is required that permits bonding at low temperatures. The use of carbon dioxide (CO₂) to assist the bonding process shows promise in reaching this goal. It is now well established that CO₂ can be used to depress the glass transition temperature (T_g) of a polymer, allowing bonding to occur at lower temperatures. Furthermore, it has been shown that CO₂ can preferentially soften a polymer surface, which should allow for effective bonding at temperatures even below the bulk T_g. However, the impact of this effect on bonding has not been quantified, and the optimal bonding temperature and CO₂ pressure conditions are unknown. In this study, a molecular dynamics model is used to examine the atomic scale behavior of polystyrene in an effort to develop understanding of the physical mechanisms of bonding and to quantify how the process is impacted by CO₂. The final result is the identification of a range of CO₂ pressure conditions which produce the strongest bonding between PS thin films at room temperature. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2011     

Ionic Liquids Can Permanently Modify Porous Silicon Surface Chemistry

To develop ionic liquid/porous silicon (IL/pSi) microarrays we have contact pin‐printed 20 hydrophobic and hydrophilic ionic liquids onto as‐prepared, hydrogen‐passivated porous silicon (ap‐pSi) and then determined the individual IL spot size, shape and associated pSi surface chemistry. The results reveal that the hydrophobic ionic liquids oxidize the ap‐pSi slightly. In contrast, the hydrophilic ionic liquids lead to heavily oxidized pSi (i.e., ox‐pSi). The strong oxidation arises from residual water within the hydrophilic ILs that is delivered from these ILs into the ap‐pSi matrix causing oxidation. This phenomenon is less of an issue in the hydrophobic ILs because their water solubility is substantially lower.     

SAMPL4 & DOCK3.7: lessons for automated docking procedures

The SAMPL4 challenges were used to test current automated methods for solvation energy, virtual screening, pose and affinity prediction of the molecular docking pipeline DOCK 3.7. Additionally, first-order models of binding affinity were proposed as milestones for any method predicting binding affinity. Several important discoveries about the molecular docking software were made during the challenge: (1) Solvation energies of ligands were five-fold worse than any other method used in SAMPL4, including methods that were similarly fast, (2) HIV Integrase is a challenging target, but automated docking on the correct allosteric site performed well in terms of virtual screening and pose prediction (compared to other methods) but affinity prediction, as expected, was very poor, (3) Molecular docking grid sizes can be very important, serious errors were discovered with default settings that have been adjusted for all future work. Overall, lessons from SAMPL4 suggest many changes to molecular docking tools, not just DOCK 3.7, that could improve the state of the art. Future difficulties and projects will be discussed.     

Synthesis and characterization of microcrystalline cellulose produced from bacterial cellulose

In this study, microcrystalline cellulose (MCC) was prepared from the acid hydrolysis of bacterial cellulose (BC) produced in culture medium of static Acetobacter xylinum. The MCC-BC produced an average particle size between 70 and 90 μm and a degree of polymerization (DP) of 250. The characterization of samples was performed by thermogravimetric analysis, X-ray diffraction, and scanning electron microscopy (SEM). The MCC shows a lower thermal stability than the pristine cellulose, which was expected due to the decrease in the DP during the hydrolysis process. In addition, from X-ray diffractograms, we observed a change in the crystalline structure. The images of SEM for the BC and MCC show clear differences with modifications of BC fiber structure and production of particles with characteristics similar to commercial MCC.     

Raman spectroscopic analysis differentiates between breast cancer cell lines

Breast cancer incident rates are increasing in women worldwide with the highest incidence rates reported in developing countries. Major breast cancer screening approaches like mammography, ultrasound, clinical breast examination (CBE) and magnetic resonance imaging (MRI) are currently used but have their own limitations. Optical spectroscopy has attained great attention from biomedical researchers in recent years due to its non‐invasive and non‐destructive detection approach. Chemometrics is one of the powerful tools used in spectroscopic research to enhance its sensitivity. Raman spectroscopy, a vibrational spectroscopic approach, has been used to explore the chemical fingerprints of different biological tissues including normal and malignant types. This approach was used to characterize and differentiate two breast cancer and one normal breast cell lines (MDA‐MB‐436, MCF‐7 and MCF‐10A) using dispersive Raman spectroscopy. Raman spectra of the cell lines have revealed that basic differences in the concentration of biochemical compounds such as lipids, nucleic acids and protein Raman peaks were found to differ in intensity, and principal component analysis (PCA) was able to identify variations that lead to accurate and reliable separation of the three cell lines. Linear discriminant analysis (LDA) model of three cell lines was predicted with 100% sensitivity and 91% specificity. We have shown that a combination of Raman spectroscopy and chemometrics are capable of differentiation between breast cancer cell lines. These variations may be useful in identifying new spectral markers to differentiate different subtypes of breast cancer although this needs confirmation in a larger panel of cell lines as well as clinical material. Copyright © 2015 John Wiley & Sons, Ltd.     

Spectroscopic characterization of SnO2 gels

Excitation and dynamic emission spectra of Eu³⁺ ions were simultaneously used with FTIR and Raman spectroscopy to study the structural evolution during SnO₂ sol gel xerogel conversion. Results make evident an increase of the surroundings symmetry for the Eu³⁺ ions dissolved in SnO₂ matrix and a decrease of the amount of hydroxo groups (Sn-OH) during drying. These phenomena were associated to the pursuit of the condensation reaction after gelation.     

Liquid phase epitaxial growth of Ca,Ge-Substituted garnet films having magnetic bubbles 1.0–3.0 μm in diameter

Ca, Ge-substituted, magnetic garnet films which would support bubbles of 1.0–3.0 μm diameter were grown by isothermal deposition frm supersaturated PbO-B₂O₃ fluxes upon garnet films were yttriumm iron garnet Y₃Fe₅O₁₂, in which rare earths substituted for yttrium and Ge substituted for Fe. Ca was added to charge compensate the Ge. A typical composition of a 2 μm bubble film might be Y_{1.35Lu0.3Sm0.6Ca0.75Fe4.25O12}, but the compositions of the films were varied by modifying the composition of the growth solution and the growth conditions. The magnetic properties of the films were dependent upon film perfection and composition. Bubble mobilities ranged ≈300–1000 cm/sec-Oe. The films, whose thickness varied from 1.0–3.0 μm to match buble diameters, were uniform in thickness to less than 0.30 μm across a 2.54 cm diameter slice. The properties of the films were sufficiently stable with temperature from 0–100°C to indicate that these materials could be used in memory devices.