Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1

CutA1 is widely found in bacteria, plants and animals, including humans. The functions of CutA1, however, have not been well clarified. It is known that CutA1s from Pyrococcus horikoshii, Thermus thermophilus and Oryza sativa unfold at temperatures remarkably higher than the growth temperatures of the host organisms. In this work the crystal structure of CutA1 from the psychrotrophic bacterium Shewanella sp. SIB1 (SIB1-CutA1) in a trimeric form was determined at 2.7?? resolution. This is the first crystal structure of a psychrotrophic CutA1. The overall structure of SIB1-CutA1 is similar to those of CutA1 from Homo sapiens, Escherichia coli, Pyrococcus horikoshii, Thermus thermophilus, Termotoga maritima, Oryza sativa and Rattus norvergicus. A peculiarity is observed in the β2 strand. The β2 strand is divided into two short β strands, β2a and β2b, in SIB1-CutA1. A thermal denaturation experiment revealed that SIB1-CutA1 does not unfold completely at 363?K at pH 7.0, although Shewanella sp. SIB1 cannot grow at temperatures exceeding 303?K. These results indicate that the trimeric structural motif of CutA1 is the critical factor in its unusually high stability and suggest that CutA1 needs to maintain its high stability in order to function, even in psychrotrophs.     

Three-dimensional snow images by MR microscopy

MR microscopy technique was introduced to visualize and quantify the three-dimensional structure of snowpack. Since the NMR signal from the ice was week, we looked at the air space instead filling with dodecane or aniline doped with iron acetylacetonate. Four types of snow were tested: ice spheres, large rounded poly crystals, small rounded mono-crystals and depth hoar crystals. A specific specimen-cooling system was developed to keep the temperature below 0 degrees C. In the experiments 0.5 to 2 h were necessary to accumulate the signals enough to obtain a 3D micro-image; the image matrix 128(3), voxel size (200 microm)3 or 256(3) (120 microm)3. Comparison with the 2D data using the conventional section plane method was also carried out and MR microscopy is proved to be a very useful method to visualize the microstructure of snowpack.     

Rhenium-catalyzed regioselective synthesis of multisubstituted pyridines from β-enamino ketones and alkynes via C-C bond cleavage

A new method is described for the regioselective synthesis of multisubstituted pyridine derivatives. Treatment of N-acetyl β-enamino ketones with alkynes in the presence of the rhenium catalyst, Re(2)(CO)(10), gives multisubstituted pyridines regioselectively. In this reaction, the N-acetyl moieties are important for the selective formation of the multisubstituted pyridines. This reaction proceeds via insertion of alkynes into a carbon-carbon single bond of β-enamino ketones, intramolecular nucleophilic cyclization, and elimination of acetic acid.     

Preparation of mesoporous silicas using food grade emulsifiers and its application for enzyme supports

A novel mesoporous silica (TMPS) was synthesized via self-assembly using a myristic acid ester of pentaglycerol. The ester is obtained from catalytic esterification and it is commercially available as a food grade emulsifier. TMPS material was employed for preparation of a biocatalyst in order to examine the ability as an enzyme support in comparison with the other mesoporous silica materials having a channel or a cage-like pore system. The used TMPS materials possessed the interconnected channel-like pore system with the pore sizes of 9.2, 12, and 16 nm. The materials successfully entrapped lipase into their mesopores with the high loadings. The resultant lipase/TMPS conjugates functioned as the biocatalyst for hydrolysis of p-nitrophenyl propionate (p-NPP), having the higher activity than those of the used mesoporous silica conjugates. The high activities were ascribed to the textural properties such as the small particle length, large pore size and the three-dimensional pore connectivity that permit the accessibility of p-NPP to the immobilized lipases during the reactions. Consequently, we concluded that TMPS materials are of the suitable mesoporous support for the enzymes.     

Direct Observation of Fluorescently Labeled Single-stranded λDNA Molecules in a Micro-Flow Channel

We developed two labeling methods for the direct observation of single-stranded DNA (ssDNA), using a ssDNA binding protein and a ssDNA recognition peptide. The first approach involved protein fusion between the 70-kDa ssDNA-binding domain of replication protein A and enhanced yellow fluorescent protein (RPA-YFP). The second method used the ssDNA binding peptide of Escherichia coli RecA labeled with Atto488 (ssBP-488; Atto488-IRMKIGVMFGNPETTTGGNALKFY). The labeled ssλDNA molecules were visualized over time in micro-flow channels. We report substantially different dynamics between these two labeling methods. When ssλDNA molecules were labeled with RPA-YFP, terminally bound fusion proteins were sheared from the free ends of the ssλDNA molecules unless 25-mer oligonucleotides were annealed to the free ends. RPA-YFP-ssλDNA complexes were dissociated by the addition of 0.2 M NaCl, although complex reassembly was possible with injection of additional RPA-YFP. In contrast to the flexible dynamics of RPA-YFP-ssλDNA complexes, the ssBP-488-ssλDNA complexes behaved as rigid rods and were not dissociated even in 2 M NaCl.     

Differential geometry of edgeworth expansions in curved exponential family

Summary In order to construct a higher-order asymptotic theory of statistical inference, it is useful to know the Edgeworth expansions of the distributions of related statistics. Based on the differential-geometrical method, the Edgeworth expansions are performed up to the third-order terms for the joint distribution of any efficient estimators and complementary (approximate) ancillary statistics in the case of curved exponential family. The marginal and conditional distributions are also obtained. The roles and meanings of geometrical quantities are elucidated by the geometrical interpretation of the Edgeworth expansions. The results of the present paper provide an indispensable tool for constructing the differential-geometrical theory of statistics.     

Catalytic asymmetric synthesis of binaphthol derivatives by aerobic oxidative coupling of 3-hydroxy-2-naphthoates with chiral diamine-copper complex

Asymmetric aerobic oxidative coupling of 3-hydroxy-2-naphthoate with a copper complex prepared in situ from chiral diamine 3 and cuprous chloride as catalyst afforded binaphthol derivatives in good enantioselectivities up to 73% ee.