The dinuclear Zn(II) complex catalyzed cyclization of a series of 2-hydroxypropyl aryl phosphate RNA models: progressive change in mechanism from rate-limiting P-O bond cleavage to substrate binding

A methoxide-bridged dinuclear Zn(II) complex of 1,3-[N,N'-bis(1,5,9-triazacyclododecane)]propane (1-Zn(II)2:(-OCH3)) was prepared, and its catalysis of the cyclization of a series of 2-hydroxypropyl aryl phosphates (4a-g) was investigated in methanol at pH 9.8, T = 25degreesC by stopped-flow spectrophotometry. An X-ray diffraction structure of the hydroxide analogue of 1-Zn(II)2:(-OCH3), namely 1-Zn(II)2:(-OH), reveals that each of the Zn(II) ions is coordinated by the three N's of the triazacyclododecane units and a bridging hydroxide. The cyclizations of substrates 4a-g reveal a progressive change in the observed kinetics from Michaelis-Menten saturation kinetics for the poorer substrates (4-OCH3 (4g); 4-H (4f); 3-OCH3 (4e); 4-Cl (4d); 3-NO2, (4c)) to second-order kinetics (linear in 1-Zn(II)2:(-OCH3)) for the better substrates (4-NO2,3-CH3 (4b); 4-NO2, (4a)). The data are analyzed in terms of a multistep process whereby a first formed complex rearranges to a reactive complex with a doubly activated phosphate coordinated to both metal ions. The kinetic behavior of the series is analyzed in terms of change in rate-limiting step for the catalyzed reaction whereby the rate-limiting step for the poorer substrates (4g-c) is the chemical step of cyclization of the substrate, while for the better substrates (4b,a) the rate-limiting step is binding. The catalysis of the cyclization of these substrates is extremely efficient. The kcat/KM values for the catalyzed reactions range from 2.75 x 10(5) to 2.3 x 10(4) M-1 s-1, providing an acceleration of 1 x 10(8) to 4 x 10(9) relative to the methoxide reaction (k2OCH3, which ranges from 2.6 x 10(-3) to 5.9 x 10(-6) M-1 s-1 for 4a-g). At a pH of 9.8 where the catalyst is maximally active, the acceleration for the substrates ranges from (1 - 4) x 10(12) relative to the background reaction at the same pH. Detailed energetics calculations show that the transition state for the catalyzed reaction comprising 1-Zn(II)2, methoxide, and 4 is stabilized by about -21 to -23 kcal/mol relative to the transition state for the methoxide reaction. The pronounced catalytic activity is attributed to a synergism between a positively charged catalyst that has high affinity for the substrate and for the transition state for cyclization, and a medium effect involving a reduced polarity/dielectric constant that complements a reaction where an oppositely charged reactant and catalyst experience charge dispersal in the transition state.     

TiIV-mediated reactions between primary amines and secondary carboxamides: amidine formation versus transamidation

Titanium(IV)-mediated reactions between primary amines and secondary carboxamides exhibit different outcomes, amidine formation versus transamidation, depending on the identity of the TiIV complex used and the reaction conditions employed. The present study probes the origin of this divergent behavior. We find that stoichiometric TiIV, either Cp*TiIV complexes or Ti(NMe2)4, promotes formation of amidine and oxotitanium products. Under catalytic conditions, however, the outcome depends on the identity of the TiIV complex. Competitive amidine formation and transamidation are observed with Cp*TiIV complexes, generally favoring amidine formation. In contrast, the use of catalytic Ti(NMe2)4 (< or =20 mol %) results in highly selective transamidation. The ability of TiIV to avoid irreversible formation of oxotitanium products under the latter conditions has important implications for the use of TiIV in catalytic reactions.     

Direct asymmetric catalytic 1,2-addition of RZnX to aldehydes promoted by AlMe3 and reversal of expected stereochemistry

Addition of AlMe3 to commercial THF solutions of RZnX (R = aryl, functionalised aryl, vinyl; X = Br, I) simultaneously promotes Schlenk equilibria (leading to competent nucleophiles) and the formation of an Al-Zn-ligand catalyst delivering 80-90% ee for Ar(1)CH(OH)Ar(2) formation from aldehydes.     

Patterned burst-pulse vocalizations of the northern right whale dolphin, Lissodelphis borealis

Vocalizations from the northern right whale dolphin, Lissodelphis borealis, were recorded during a combined visual and acoustic shipboard survey of cetacean populations off the west coast of the United States. Seven of twenty single-species schools of L. borealis produced click and pulsed vocalizations. No whistles were detected during any of the encounters. Clicks associated with burst-pulse vocalizations were lower in frequency and shorter in duration than clicks associated with echolocation. All burst-pulse sounds were produced in a series containing 6-18 individual burst-pulses. These burst-pulse series were stereotyped and repeated. A total of eight unique burst-pulse series were detected. Variation in the temporal characteristics of like units compared across repeated series was less than variation among all burst-pulses. These stereotyped burst-pulse series may play a similar communicative role as do stereotyped whistles found in other delphinid species.     

A simplified cavity analysis for estimating energy coupling during laser ablation and drilling of solids — experiment

The theory for a general departure function, f, for laser-irradiated cavities was previously developed to estimate laser energy coupling to an opaque solid target as a function of heat transfer and the cavity shape and size. In this article, a specific form of f is calculated for ultraviolet (UV) laser ablation of copper (Cu) and aluminum (Al) targets. Methods are also given for calculating the geometric factor, a, and experimentally determining the heat transfer parameter, ν, which is shown for this form of f to be the intensity-dependent effective reflectivity of the material. Experimental results for different gauges of laser energy coupling with a solid target are given and compared to calculations of net absorbed energy based on f and the incident laser energy. Using the simplified cavity analysis, the results demonstrate that the experimental values for f fall within the limits predicted by the theory, and that energy coupling can be predicted to within a mean of 2% of experimental gauges. Neglecting the factors in f from calculations of energy coupling can lead to large errors for laser-irradiated cavities, establishing that both cavity shape and heat transfer should be simultaneously considered. In addition, a first-order sensitivity analysis based on f shows that the initial rate of change in material removal strongly increases with reflectivity, which can lead to runaway cavity formation for highly reflective materials.     

Reduced formation of peroxide and radical species stabilises iron-based hybrid catalysts in polymer electrolyte membrane fuel cells

The incorporation of Pt into an iron-nitrogen-carbon(Fe NC)catalyst for the oxygen reduction reaction(ORR)was recently shown to enhance catalyst stability without Pt directly contributing to the ORR activity.However,the mechanistic origin of this stabilisation remained obscure.It is established herein with rotating ring disc experiments that the side product,H₂O₂,which is known to damage FeNC catalysts,is suppressed by the presence of Pt.The formation of reactive oxygen species is additionally inhibited,independent of intrinsic H₂O₂ formation,as determined by electron paramagnetic resonance.Transmission electron microscopy identifies an oxidised Fe-rich layer covering the Pt particles,thus explaining the inactivity of the latter towards the ORR.These insights develop understanding of Fe NC degradation mechanisms during ORR catalysis,and crucially establish the required properties of a precious metal free protective catalyst to improve Fe NC stability in acidic media.     

Reproducibility of myelin water fraction analysis: a comparison of region of interest and voxel-based analysis methods

This study compared region of interest (ROI) and voxel-based analysis (VBA) methods to determine the optimal method of myelin water fraction (MWF) analysis. Twenty healthy controls were scanned twice using a multi-echo T₂ relaxation sequence and ROIs were drawn in white and grey matter. MWF was defined as the fractional signal from 15 to 40 ms in the T₂ distribution. For ROI analysis, the mean intensity of voxels within an ROI was fit using non-negative least squares. For VBA, MWF was obtained for each voxel and the mean and median values within an ROI were calculated. There was a slightly higher correlation between Scan 1 and 2 for the VBA method (R²=0.98) relative to the ROI method (R²=0.95), and the VBA mean square difference between scans was 300% lower, indicating VBA was the most consistent between scans. For the VBA method, mean MWF was found to be more reproducible than median MWF. As the VBA method is more reproducible and gives more options for visualization and analysis of MWF, it is recommended over the ROI method of MWF analysis.     

Correlation between optical constants and crystal chemical parameters of ZrW2O8

The refractive indices of ZrW₂O₈, measured at wavelengths of 435.8-643.8 nm, were used to calculate n_D at λ=589.3 nm and n_∞ at λ=∞ from a one-term Sellmeier equation. Refractive indices, n_D and dispersion values, A, are, respectively, 1.8794 and 114×10⁻¹⁶ m². The high dispersion, relative to other molybdates, tungstates and Zr-containing compounds, is attributed to the low value of E_o=7.7 eV and mean cation coordination number. Total electronic polarizabilities, α_total, were calculated from n_∞ and the Lorenz-Lorentz equation. The unusually large difference between the observed polarizability of 20.087 Å³ and the calculated total polarizability α_T of 17.59 Å³ (Δ=+12.4%) is attributed to (1) a large M-O-W angle, (2) a high degree of W 5d-O_(terminal) 2p and Zr nd-O 2p hybridization, and (3) unusually high oxygen displacement factors, B(O), normalized to B(W).     

Mechanism of Pd(OAc)2/DMSO-catalyzed aerobic alcohol oxidation: mass-transfer-limitation effects and catalyst decomposition pathways

Pd(OAc)(2) in DMSO is an effective catalyst for the aerobic oxidation of alcohols and numerous other organic substrates. Kinetic studies of the catalytic oxidation of primary and secondary benzylic alcohol substrates provide fundamental insights into the catalytic mechanism. In contrast to the conclusion reached in our earlier study (J. Am. Chem. Soc. 2002, 124, 766-767), we find that Pd(II)-mediated alcohol oxidation is the turnover-limiting step of the catalytic reaction. At elevated catalyst loading, however, the rate of catalytic turnover is limited by the dissolution of oxygen gas into solution. This mass-transfer rate is measured directly by using gas-uptake methods, and it correlates with the maximum rate observed during catalysis. Initial-rate studies were complemented by kinetic analysis of the full-reaction timecourses at different catalyst concentrations. Kinetic fits of these traces reveal the presence of unimolecular and bimolecular catalyst decomposition pathways that compete with productive catalytic turnover.