Implementation of visual data mining for unsteady blood flow field in an aortic aneurysm

Abstract  

This study was performed to determine the relations between the features of wall shear stress and aneurysm rupture. For this purpose, visual data mining was performed in unsteady blood flow simulation data for an aortic aneurysm. The time-series data of wall shear stress given at each grid point were converted to spatial and temporal indices, and the grid points were sorted using a self-organizing map based on the similarity of these indices. Next, the results of cluster analysis were mapped onto the real space of the aortic aneurysm to specify the regions that may lead to aneurysm rupture. With reference to previous reports regarding aneurysm rupture, the visual data mining suggested specific hemodynamic features that cause aneurysm rupture.     

Effect of polymer addition amount and type on thermal decomposition behavior of spray-dried particles comprising ammonium nitrate,potassium nitrate,and polymer

Certain properties of ammonium nitrate (AN), such as high hygroscopicity and the thermal transformation of the crystal structure accompanied by volume changes, pose problems for industrial applications of AN. To solve these problems, we previously prepared AN-based particles by spray-drying. The particles contained potassium nitrate (PN) as a phase stabilizer and a polymer (e.g., PVA, CMCs, and Latex) to produce a moisture-resistant material. Herein, we investigate the thermal decomposition of spray-dried AN/PN/polymer particles by differential scanning calorimetry and Thermogravimetry–Differential thermal analysis. Comparison of the thermal decomposition of AN/PN/polymer materials with different amounts and types of polymers suggested that thermal decomposition at lower temperatures resulted from the reaction of AN with the molten polymer or decomposition products derived from the polymer. Therefore, it can be concluded that the thermal stability of the AN/PN/polymer was exclusively determined by the thermal properties of the polymer components.     

Phytochrome-mediated inhibition of coleoptile growth in rice: age-dependency and action spectra

Phytochrome has been shown to be the major photoreceptor involved in the photo-inhibition of coleoptile growth in Japonica-type rice (Oryza sativa L.). We have characterized this typical photomorphogenetic response of rice using mutants deficient in phytochrome A (phyA) and phytochrome B (phyB) and with respect to age-dependency and action spectra. Seedlings were irradiated with a pulse of light 40 h or 80 h after germination (i.e. at an early or late developmental stage) and the final coleoptile length of these seedlings was determined. A saturating pulse of red light (R) had a stronger effect when it was given in the late stage than in the early stage. It was found that the photoinhibition is mediated by both the phyA and the phyB in the late stage but predominantly by phyB in the early stage. Consistent with many other reported responses, the photo-inhibition in the phyA mutant, which was observed in the early and late developmental stages and is thought to be mediated mainly by phyB, occurred in the low-fluence range (10(1)-10(3) micromol m(-2)) of R and was far-red-light (FR)-reversible; the photo-inhibition in the phyB mutant, which was observed in the late developmental stage and is thought to be mediated mainly by phyA, occurred in the very-low-fluence range (10(-2)-10(0) micromol m(-2)) and was FR-irreversible. The action spectra (350-800 nm at 50 nm intervals) obtained at the two developmental stages using phyA and phyB mutants indicated that both the phyB-mediated low-fluence response and the phyA-mediated very-low-fluence response have a major peak at 650 nm and a minor peak at 400 nm.     

Two-dimensional iron(II) spin crossover complex constructed of bifurcated NH...O- hydrogen bonds and pi-pi interactions: [FeII(HLH,Me)2](ClO4)2.1.5MeCN (HLH,Me = imidazol-4-yl-methylidene-8-amino-2-methylquinoline)

A 2D iron(II) spin crossover complex, [FeII(HLH,Me)2](ClO4)2.1.5MeCN (1), was synthesized, where HLH,Me = imidazol-4-yl-methylidene-8-amino-2-methylquinoline. 1 showed a gradual spin transition between the HS (S = 2) and LS (S = 0) states from 180 to 325 K within the first warming run from 5 to 350 K, in which 1.5MeCN is removed, and there was an abrupt spin transition at T1/2 downward arrow = 174 K in the first cooling run from 350 to 5 K. Following the first cycle, the compound showed an abrupt spin transition at T1/2 upward arrow = 185 K and T1/2 downward arrow = 174 K with 11 K wide hysteresis in the second cycle. The crystal structures of 1 were determined at 296 (an intermediate between the HS and LS states) and 150 K (LS state). The structure consists of a 2D extended structure constructed of both the bifurcated NH...O- hydrogen bonds between two ClO4- ions and two neighboring imidazole NH groups of the [FeII(HLH,Me)2]2+ cations and the pi-pi interactions between the two quinolyl rings of the two adjacent cations. Thermogravimetric analysis showed that solvent molecules are gradually eliminated even at room temperature and completely removed at 369 K. Desolvated complex 1' showed an abrupt spin transition at T1/2 upward arrow = 180 K and T1/2 downward arrow = 174 K with 6 K wide hysteresis.     

New implementation of second-order Møller-Plesset perturbation theory with an analytic Slater-type geminal

The author introduces a new method for the exchange commutator integrals in explicitly correlated M?ller-Plesset second order perturbation theory. The method is well suited with an analytic Slater-type geminal correlation factor. He also explains the scheme for auxiliary integrals needed for the correlation factor. Based on different Ans?tze, he analyzes the performance of the method on correlation energies and reaction enthalpies in detail.     

Radical-scavenging activity of natural methoxyphenols vs. synthetic ones using the induction period method

The radical-scavenging activities of the synthetic antioxidants 2-allyl-4-X-phenol (X = NO2, Cl, Br, OCH3, COCH3, CH3, t-(CH3)3, C6H5) and 2,4-dimethoxyphenol, and the natural antioxidants eugenol and isoeugenol, were investigated using differential scanning calorimetry (DSC) by measuring their anti-1,1-diphenyl-2-picrylhydrazyl (DPPH) radical activity and the induction period for polymerization of methyl methacrylate (MMA) initiated by thermal decomposition of 2,2'-azobisisobutyronitrile (AIBN) and benzoyl peroxide (BPO). 2-Allyl-4-methoxyphenol and 2,4-dimethoxy-phenol scavenged not only oxygen-centered radicals (PhCOO*) derived from BPO, but also carbon-centered radicals (R*) derived from the AIBN and DPPH radical much more efficiently, in comparison with eugenol and isoeugenol. 2-Allyl-4-methoxyphenol may be useful for its lower prooxidative activity.     

A hydrogen bond motif giving a variety of supramolecular assembly structures and spin-crossover behaviors

A series of spin-crossover (SCO) iron(II) compounds, fac-[Fe(II)(HL(R))(3)]Cl·PF(6) [R = methyl (Me, 1), ethyl (Et, 2), n-propyl (n-Pr, 3), n-butyl (n-Bu, 4), and n-pentyl (n-Pen, 5)], were synthesized, where HL(R) denotes a series of [(2-methylimidazol-4-yl)methylidene]monoalkylamines. The cations fac-[Fe(II)(HL(R))(3)](2+) and chloride anions associate through 3:3 imidazole···chloride hydrogen bonding. This hydrogen-bonding motif gives rise to a variety of assembly structures consisting of a one-dimensional ladder for 3 and 4, two kinds of two-dimensional networks for 1 and 2, and a cubane-like structure for 5. The compounds exhibit various types of SCO transitions between high-spin (S = 2) and low-spin (S = 0) states as a result of their intermolecular interactions.     

MPI/OpenMP hybrid parallel implementation of second-order M?ller�CPlesset perturbation theory using numerical quadratures

An algorithm for massively parallel computers is developed for energy calculations of second-order M?ller?CPlesset (MP2) perturbation theory with numerical quadratures. Message Passing Interface (MPI) and Open Multi-Processing (OpenMP) technologies are utilized for inter-node and intra-node parallelization, respectively. Computational tasks and intermediates are distributed across nodes by dividing quadrature points, and the distributed data are stored in memory. Benchmark calculations were performed on 256?C8,192 CPU cores, and we observed the speed-ups 4,534?C6,266 for 8,192 cores. A large calculation for fullerene (C₆₀) with aug-cc-pCVTZ (3,540 basis functions) was completed in ca. 4.8?h on 8,192 cores without invoking molecular symmetry.     

An explicitly correlated Mukherjee's state specific coupled cluster method: development and pilot applications

This paper reports development of the explicitly correlated variant of Mukherjee's state specific multireference coupled cluster method (MkCC-F12). The current implementation is restricted to conventional single and double excitations and to pseudo-double excitations related to the Slater Type Geminal (STG) correlation factor using the SP ansatz. The performance of the MkCCSD-F12 was tested on calculations of singlet methylene, dissociation curve of the fluorine molecule, and the BeH(2) insertion pathway. As expected, the results of the newly developed method reconfirm the significantly faster convergence with respect to the basis set limit compared to the traditional expansion in Slater determinants. Results prove that treating the correlation factor separately for each reference is appropriate.