Experimental and theoretical investigations of the inelastic and reactive scattering dynamics of O(3p) + D2

This paper presents a combined experimental and theoretical study of the dynamics of O((3)P) + D(2) collisions, with emphasis on a center-of-mass (c.m.) collision energy of 25 kcal mol(-1). The experiments were conducted with a crossed-molecular-beams apparatus, employing a laser detonation source to produce hyperthermal atomic oxygen and mass spectrometric detection to measure the product angular and time-of-flight distributions. The novel beam source, which enabled these experiments to be conducted, contributed unique challenges to the experiments and to the analysis, so the experimental methods and approach to the analysis are discussed in detail. Three different levels of theory were used: (1) quasiclassical trajectories (QCT), (2) time-independent quantum scattering calculations based on high-quality potential surfaces for the two lower-energy triplet states, and (3) trajectory-surface-hopping (TSH) studies that couple the triplet surfaces with the lowest singlet surface using a spin-orbit Hamiltonian derived from ab-initio calculations. The latter calculations explore the importance of intersystem crossing in the dynamics. Both experiment and theory show that inelastically scattered O atoms scatter almost exclusively in the forward direction, with little or no loss of translational energy. For the reaction, O((3)P) + D(2) --> OD + D, the experiment shows that, on average, approximately 50% of the available energy goes into product translation and that the OD product angular distributions are largely backward-peaked. These results may be interpreted in light of the QCT and TSH calculations, leading to the conclusion that the reaction occurs mainly on triplet potential energy surfaces with, at most, minor intersystem crossing to a singlet surface. Reaction on either of the two low-lying reactive triplet surfaces proceeds through a rebound mechanism in which the angular distributions are backward-peaked and the product OD is both vibrationally and rotationally excited. The quantum scattering results are in good agreement with QCT calculations, indicating that quantum effects are relatively small for this reaction at a collision energy of 25 kcal mol(-1).     

Alpha- and beta-stilbenosides as base-pair surrogates in DNA hairpins

The synthesis, structure, and optical spectroscopy of hairpin oligonucleotide conjugates possessing synthetic stilbene C-nucleosides (stilbenosides) are reported. Synthetic methods for selective preparation of both the alpha- and beta-stilbenosides have been developed. Both anomers are effective in stabilizing hairpin structures when used as capping groups at the open end of the hairpin base-pair domain. However, only the beta-anomer effectively stabilizes the hairpin structure when located in the interior of the base-pair domain opposite an abasic site. Similar results are obtained for hairpins possessing two stilbenosides, either adjacent to each other or with one intervening base-pair. Molecular dynamics simulations are employed to obtain averaged structures for these conjugates. The calculated structures for the capped hairpins formed with either anomer show effective pi-stacking with the adjacent base-pair. The calculated structures for the internal stilbenosides show that the alpha- and beta-anomers form extrahelical and intrahelical structures, respectively. The relative orientations of the two stilbenes in the bis-stilbenosides have been studied using a combination of exciton-coupled circular dichroism spectroscopy and molecular modeling.     

Chaotic mixing in microdroplets

We describe a general methodology for introducing thorough chaotic mixing in microdroplets. The mixing properties of fluid flows in microdroplets are governed by their symmetries, which give rise to invariant surfaces serving as barriers to transport. Complete three-dimensional mixing by chaotic advection requires destruction of all flow invariants. To illustrate this idea, we demonstrate that complete mixing can be obtained in a time-dependent flow produced by moving a microdroplet along a two-dimensional path. The theoretical predictions are confirmed by experiments that use the thermocapillary effect to manipulate microdroplets.     

Multipole plasmon resonances in gold nanorods

The optical properties of gold rods electrochemically deposited in anodic aluminum oxide templates have been investigated. Homogeneous suspensions of rods with an average diameter of 85 nm and varying lengths of 96, 186, 321, 465, 495, 578, 641, 735, and 1175 nm were fabricated. The purity and dimensions of these rod nanostructures allowed us to observe higher-order multipole resonances for the first time in a colloidal suspension. The experimental optical spectra agree with discrete dipole approximation calculations that have been modeled from the dimensions of the gold nanorods.     

Kinetic acidity of supramolecular imidazolium salts-effects of substituent, preorientation, and counterions on H/D exchange rates

The deprotonation of imidazolium salts to N-heterocyclic carbenes is often a decisive step in modern catalytic reactions. Therefore, we studied the H/D exchange of the C2 H of 15 imidazolium-substituted calix[4]arenes and 11 nonmacrocyclic model compounds in methanol/water (97:3). The influence of the counterion, substitution directly on the imidazolium unit or on the preorientating calixarene backbone could be studied. The observed exchange rates might give a rational for the suitability of the imidazolium salts as precursors in the Suzuki coupling.     

Phase of molecular ink in nanoscale direct deposition processes

We report the first observation of a phase transition in a nanoscale direct deposition process. This transition involves the melting of molecular ink layers in dip-pen nanolithography, and it is observed by measuring the temperature dependence of the growth rate of the deposited pattern. The results are interpreted using a diffusion equation approach in conjunction with a "double-molecular-layer" model of the adsorbed molecules on the atomic force microscope tip. The theory provides a qualitative explanation for the dependence of the pattern growth rate on solvent and adsorbed water as well as on temperature.     

Theories of reactive scattering

This paper is an overview of the theory of reactive scattering, with emphasis on fully quantum mechanical theories that have been developed to describe simple chemical reactions, especially atom-diatom reactions. We also describe related quasiclassical trajectory applications, and in all of this review the emphasis is on methods and applications concerned with state-resolved reaction dynamics. The review first provides an overview of the development of the theory, including a discussion of computational methods based on coupled channel calculations, variational methods, and wave packet methods. Choices of coordinates, including the use of hyperspherical coordinates are discussed, as are basis set and discrete variational representations. The review also summarizes a number of applications that have been performed, especially the two most comprehensively studied systems, H+H2 and F+H2, along with brief discussions of a large number of other systems, including other hydrogen atom transfer reactions, insertion reactions, electronically nonadiabatic reactions, and reactions involving four or more atoms. For each reaction we describe the method used and important new physical insight extracted from the results.     

Charge transport through extended molecular wires with strongly correlated electrons

Electron–electron interactions are at the heart of chemistry and understanding how to control them is crucial for the development of molecular-scale electronic devices. Here, we investigate single-electron tunneling through a redox-active edge-fused porphyrin trimer and demonstrate that its transport behavior is well described by the Hubbard dimer model, providing insights into the role of electron–electron interactions in charge transport. In particular, we empirically determine the molecule''s on-site and inter-site electron–electron repulsion energies, which are in good agreement with density functional calculations, and establish the molecular electronic structure within various oxidation states. The gate-dependent rectification behavior confirms the selection rules and state degeneracies deduced from the Hubbard model. We demonstrate that current flow through the molecule is governed by a non-trivial set of vibrationally coupled electronic transitions between various many-body ground and excited states, and experimentally confirm the importance of electron–electron interactions in single-molecule devices.

Experimental studies of electron transport through an edge-fused porphyrin oligomer in a graphene junction are interpreted within a Hubbard dimer framework.     

Far-infrared laser-emission spectroscopy on ammonia isotopomers

In this paper we report the investigation of the isotopic ammonia gases¹⁴NH₃,¹⁴NH₂D,¹⁴NHD₂,¹⁵NH₃ and¹⁵ND₃ optically pumped by a continuously tunable 20 atm CO₂-laser. We found 267 far-infrared emission lines, produced by both inversion and Raman processes, in the frequency range from 15 cm^–1 to about 250 cm^–1. 200 of these were observed for the first time. We obtained far-infrared Raman tuning ranges exceeding 3 cm^–1, photon conversion coefficients up to 12% and maximum output energies of 0.9 mJ. Furthermore, the optimum gas pressure, the polarization and the transient behavior of optically pumped ammonia have been investigated.