Cloning and characterization of an active fragment of luciferase from a luminescent marine alga, Pyrocystis lunula

Two marine dinoflagellates, Lingulodinium polyedrum and Pyrocystis lunula, emit light in a reaction involving the enzymatic oxidation of its tetrapyrrole luciferin by molecular oxygen. The characteristic properties of P. lunula luciferase have not been clarified, whereas L. polyedrum luciferase, which has three active domains, has been characterized. A cloned partial cDNA of the P. lunula luciferase encodes an active fragment corresponding to part of domain 2 and all of domain 3 of L. polyedrum luciferase. The homology of the amino acid sequence between the two luciferases in domain 3 is about 84.3%. A recombinant His-tagged luciferase fragment containing domain 3 (Mr = 46 kDa) catalyzed the light-emitting oxidation of luciferin (lambdamax = 474 nm). This protein was purified by a single affinity-chromatography procedure. The pH-activity profile and the bioluminescence spectrum of the recombinant enzyme having a third domain are almost identical to those of an extract from P. lunula cultured in vitro. The recombinant enzyme is active at pH 8.0, although the recombinant enzyme derived from the second domain of L. polyedrum luciferase is inactive at pH 8.0. Substitution of Glu-201 by histidine in the third domain of P. lunula luciferase showed a decrease of activity above pH 7.0, suggesting that histidine residues could be responsible for pH-sensitivity in dinoflagellate luciferase.     

Diastereocontrolled synthesis of dinucleoside phosphorothioates using a novel class of activators, dialkyl(cyanomethyl)ammonium tetrafluoroborates

A novel class of activators, dialkyl(cyanomethyl)ammonium tetrafluoroborates 1a-c, has been developed and applied to the condensations of diastereopure 5'-O-tert-butyldiphenylsilylthymidine 3'-cyclic phosphoramidites 3a-d with 3'-O-tert-butyldimethylsilylthymidine (4a). Among them, the condensation of 3a with 4a in the presence of 1a completed within 5 min and gave only one diastereoisomer of the corresponding phosphite 5a. After sulfurization and deprtection, almost diastereopure (Rp)-TpsT 7 was obtained (d.r. = 99:1). Next the 5'-O-(DMTr)nucleoside 3'-phosphoramidites 8a-d containing thymine, N6-benzoyladenine, N4-benzoylcytosine, and N2-phenylacetylguanine have been synthesized and allowed to condense with 3'-O-protected thymidine and 2'-deoxyadenosine. The 5'-O-DMTr group and the N-acyl groups of the nucleobases were compatible with the reaction conditions and the condensations completed quickly with excellent diastereoselectivity.     

Crystal structure of a methyl(methoxy)carbene complex of nickel(II), trans-[Ni(C6Cl5)(PMe2Ph)2{C(OMe)Me}]BF4

The structure of a nickel(II) complex, trans-[Ni(C₆Cl₅)(PMe₂Ph)₂{C(OMe)Me}]BF₄, containing the simplest alkyl(alkoxy)carbene ligand has been determined by X-ray crystallography (R = 0.091). The geometry around the nickel atom is square-planar. The comparatively short NiC(1) bond length of 1.843(10) Å showed the presence of π-bonding in the nickel-carbene bond.     

Supramolecular Sensor for Astringent Procyanidin C1: Fluorescent Artificial Tongue for Wine Components

An artificial tongue that detects astringent components for a comprehensive evaluation of taste has not been established to date. Herein, we first propose fluorescent polythiophene (PT) derivatives ( S1 – S3 ) modified with 3-pyridinium boronic acid as supramolecular chemosensors for wine components including astringent procyanidin C1. After numerous attempts for the synthetic conditions, more than 95 mol % of the PT unit was modified with the pyridinium boronic acid moiety. To evaluate the PT derivatives as chemosensors of the artificial tongue, qualitative and quantitative analyses were performed with four types of wine components (i.e., sweet, sour, bitter, and astringent tastes) in combination with pattern recognition models. Notably, procyanidin C1 in the actual wine sample was successfully detected in a quantitative manner. In other words, we have established an authentic artificial tongue using PT based supramolecular chemosensors.     

Synthesis of bis(N-heterocyclic carbene) palladium complexes derived from (S,S)-1,2-bis(1-hydroxypropyl)benzene

New o-xylylene-linked bis(benzimidazolium) salts were synthesized in six-steps from C₂-symmetric chiral 1,4-diol, 1,2-bis(1-hydroxypropyl)benzene, as a starting material. The silver complex of bis(benzimidazol-2-ylidene) was obtained on treatment of bis(benzimidazolium) salt with silver oxide. The reaction of the silver bis-NHC with [PdCl₂(PhCN)₂] afforded the bis-NHC complex of palladium. The X-ray diffraction studies on Pd complexes revealed that these complexes have distorted square planar geometry around the Pd center coordinating the NHC ligand in mutually cis-position. The arene ring of o-xylylene unit hanged over the Pd center and thus these complexes showed C₁-symmetric structures. The variable temperature NMR spectroscopy revealed that these Pd complexes showed fluxional behavior between C₁- and C₂-symmetric structures in solution state.     

Application of solid-state early-transition metal clusters as catalysts

Metal cluster compounds are expected to be catalysts for new reactions because of synergistic effect of the metal atoms. In solid-state halide clusters and sulfide clusters, metal cluster frameworks are linked in two- or three-dimensions to form a cluster network. Halogen- or sulfur-deficient metal sites in an octahedral metal cluster framework are retained intact and act as catalytically active sites even at high temperatures of 400–700?°C. This review reports recent advances in the development of coordinatively unsaturated metal atoms on solid-state clusters with an octahedral metal framework and their application to organic catalytic reactions.     

Living anionic polymerization of ethylphenylketene: A novel approach to well‐defined polyester synthesis

A living polymerization of ethylphenylketene (EPK) was accomplished. When polymerization of EPK was carried out with butyllithium as an initiator in tetrahydrofuran (THF) at −20 °C, EPK was completely consumed within 5 min, and the corresponding polyester with narrow molecular weight distribution (M_w /M_n ∼ 1.1) was obtained almost quantitatively. Kinetic study of the polymerization at −78 °C revealed that conversion of EPK agreed with the first‐order kinetic equation, and that M_n of the polymer increased in virtually direct proportion to the conversion. Along with these results, successful results in postpolymerization at −20 °C strongly supported living mechanism of the present polymerization. Further, lithium alkoxides having a methoxy group, styryl moiety, and nitroxyl radical, also successfully initiated polymerization of EPK to afford the corresponding polymers having functional initiating ends. In the polymerization with varying feed ratio [EPK]₀/[initiator]₀, the linear relationship between the feed ratio and M_n of the obtained polymer was observed, while maintaining narrow M_w /M_n. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 1073–1082, 2000     

Theoretical designs of singlet localized 1,3-diradicals

Spin preference and S-T gaps of localized 1,3-diradicals were studied by an orbital phase theory and theoretical calculations. The orbital phase theory was applied to rationalize thermodynamic and kinetic stabilities of diradicals. We theoretically designed some singlet localized 1,3-diradicals, substituted trimethylenes, which are more stable than the lowest triplets. Some diradicals with the four-membered rings, 2,4-disilacyclobutane-1,3-diyls, were designed and shown to have singlet ground states and to be more stable than the sigma-bonded isomers, 2,4-disilabicyclo[1.1.0]butanes. The ab initio calculations supported predictions of the stable carbon-centered localized singlet 1,3-diradicals.