Synthesis of stable and cell-type selective analogues of cyclic ADP-ribose, a Ca(2+)-mobilizing second messenger. Structure--activity relationship of the N1-ribose moiety

We previously developed cyclic ADP-carbocyclic ribose (cADPcR, 2) as a stable mimic of cyclic ADP-ribose (cADPR, 1), a Ca(2+)-mobilizing second messenger. A series of the N1-ribose modified cADPcR analogues, designed as novel stable mimics of cADPR, which were the 2"-deoxy analogue 3, the 3"-deoxy analogue 4, the 3"-deoxy-2"-O-(methoxymethyl) analogue 5, the 3"-O-methyl analogue 6, the 2",3"-dideoxy analogue 7, and the 2",3"-dideoxydidehydro analogue 8, were successfully synthesized using the key intramolecular condensation reaction with phenylthiophosphate-type substrates. We investigated the conformations of these analogues and of cADPR and found that steric repulsion between both the adenine and N9-ribose moieties and between the adenine and N1-ribose moieties was a determinant of the conformation. The Ca(2+)-mobilizing effects were evaluated systematically using three different biological systems, i.e., sea urchin eggs, NG108-15 neuronal cells, and Jurkat T-lymphocytes. The relative potency of Ca(2+)-mobilization by these cADPR analogues varies depending on the cell-type used: e.g., 3"-deoxy-cADPcR (4) > cADPcR (2) > cADPR (1) in sea urchin eggs; cADPR (1) > cADPcR (2) approximately 3"-deoxy-cADPcR (4) in T-cells; and cADPcR (2) > cADPR (1) > 3"-deoxy-cADPcR (4) in neuronal cells, respectively. These indicated that the target proteins and/or the mechanism of action of cADPR in sea urchin eggs, T-cells, and neuronal cells are different. Thus, this study represents an entry to cell-type selective cADPR analogues, which can be used as biological tools and/or novel drug leads.     

Molecular structure of 1,1-dichloroethylene as studied by gas electron diffraction and microwave data. Estimation of equilibrium structure by an extended anharmonic model analysis

The r_z structure of 1,1-dichloroethylene has been determined by a joint analysis of the electron diffraction intensity and the rotational constants as follows: $\text{r}{}_{\mathrm{<mtext>z</mtext>}}\text{(}\text{CH}\text{) = 1.088 ± 0.011, r}{}_{\mathrm{<mtext>z</mtext>}}\text{(}\text{CC}\text{) = 1.329 ± 0.003, r}{}_{\mathrm{<mtext>z</mtext>}}\text{(}\text{CCl}\text{) = 1.725 ± 0.002}\text{A}\text{?}\text{, ∠}{}_{\mathrm{<mtext>z</mtext>}}\text{HCH}\text{= 121.4 ± 0.7}\text{and}\text{∠}{}_{\mathrm{<mtext>z</mtext>}}\text{ClCCl}\text{= 114.1 ± 0.2°}$. The uncertainties represent estimated limits of error. The observed structural parameters are compared with those for related compounds and the systematic trends in the bond lengths and bond angles are discussed. The effective constants representing anharmonicity have been obtained from an analysis of the isotopic differences in the r_z structure. By using the r_z parameters and the effective constants, the equilibrium structure has been estimated as follows: $\text{r}{}_{\mathrm{<mtext>e</mtext>}}\text{(}\text{CH}\text{) = 1.079 ± 0.012, r}{}_{\mathrm{<mtext>e</mtext>}}\text{(}\text{CC}\text{) = 1.324 ± 0.005, r}{}_{\mathrm{<mtext>e</mtext>}}\text{(}\text{CCl}\text{) = 1.721 ± 0.003}\text{A}\text{?}\text{, ∠}{}_{\mathrm{<mtext>e</mtext>}}\text{HCH}\text{= 120.5 ± 0.8}\text{and}\text{∠}{}_{\mathrm{<mtext>e</mtext>}}\text{ClCCl}\text{= 114.0 ± 0.3°}$.     

Potential energy surfaces and nonadiabatic transitions in the asymptotic regions of ICN photodissociation to study the interference effects in the F1 and F2 spin-rotation levels of the CN products

One of the most spectacular yet unsolved problems for the ICN -band photodissociation is the non-statistical spin-rotation F₁ = N + 1/2 and F₂ = N − 1/2 populations for each rotation level N of the CN fragment. The F₁/F₂ population difference function f(N) exhibits strong N and λ dependences with an oscillatory behavior. Such details were found to critically depend on the number of open-channel product states, namely, whether both I (²P_3/2) and I (²P_1/2) are energetically available or not as the dissociation partner. First, in the asymptotic region, the exchange and dipole-quadrupole inter-fragment interactions were studied in detail. Then, as the diabatic basis, we took the appropriate symmetry adapted products of the electronic and rotational wavefunctions for the F₁ and F₂ levels at the dissociation limits. We found that the adiabatic Hamiltonian exhibits Rosen–Zener–Demkov type nonadiabatic transitions reflecting the switch between the exchange interaction and the small but finite spin-rotation interaction within CN at the asymptotic region. This non-crossing type nonadiabatic transition occurs with the probability 1/2, that is, at the diabatic limit through a sudden switch of the quantization axis for CN spin S from the dissociation axis to the CN rotation axis N . We have derived semiclassical formulae for f(N) and the orientation parameters with a two-state model including the 3A′ and 4A′ electronic states, and with a four-state model including the 3A′ through 6A′ electronic states. These two kinds of interfering models explain general features of the F₁ and F₂ level populations observed by Zare's group and Hall's group, respectively. © 2018 Wiley Periodicals, Inc.     

Single molecule spectroscopy as a probe for dye-polymer interactions

Experimental (Single Molecule Spectroscopy) and theoretical (quantum-chemical calculations and Monte Carlo and molecular dynamics simulations) techniques are combined to investigate the behavior and dynamics of a polymer-dye molecule system. It is shown that the dye molecule of interest (1,1'-dioctadecyl-3,3,3',3'-tetramethylindo-dicarbocyanine) adopts two classes of conformations, namely planar and nonplanar ones, when embedded in a poly(styrene) matrix. From an in-depth analysis of the fluorescence lifetime trajectories, the planar conformers can be further classified according to the way their alkyl side chains interact with the surrounding poly(styrene) chains.     

Reaction potential map analysis of site selectivity of acrylic acid and acrylonitrile

The reaction potential map (RPM) method has been extended so that the molecular reactivity towards nucleophiles can be analyzed. An anion consisting of the nucleus with + 1 charge and a pair of electrons was adopted as the model nucleophile. From the interaction energy between a substrate and this model particle, RPM and its component maps were obtained. With respect to practical applications, the reactivities of acrylic acid and acrylonitrile towards nucleophiles were examined. In these molecules, the exchange interaction as well as the charge-transfer interaction were found to be very important in the elucidation of the observed site selectivity.     

Determination of l-lactate by differential pulse polarography with covalently immobilized enzyme on Chitopearl

Summary The covalent bonding of l-lactate oxidase (no E.C.) to cross-linked copolymers of chitosan (Chitopearl) using the glutaraldehyde method is described and applied to the determination of l-lactate in serums of diseased and normal animals. The bioreactor packing of the immobilized enzyme is stable for at least 4 months and can be continuously used for the rapid and simple determination of l-lactate. The reduction current of pyruvate, corresponding to the product of enzymatic reaction, is determined by differential pulse polarography. The reproducibility (RSD) for 10 mol/l l-lactate is 0.78% (n=6) and the detection limit is 0.62 mol/l (k=2, confidence level 97.72%).     

Laser-induced deposition of Ni lines on ferrite in NiSO4 aqueous solution

Maskless deposition of nickel lines on single crystalline Mn-Zn ferrite (MnO:ZnO:Fe₂O₃=31:17:52) has been investigated in a NiSO₄ aqueous solution by Ar⁺ laser irradiation. A high deposition rate of up to 36.4m/s was achieved by a single scan of laser beam. The purity of deposited nickel layers is up to 86%. In particular, well-defined values of laser power and laser irradiation time were necessary for effective deposition. The deposition process was found to be a thermochemical process.On leave from D. S. Scanner Co., Ltd., 5-3-7. Fukushima, Osaka 553, Japan     

Photoinduced rotational isomerization mechanism of 2-chlorobenzaldehyde in low-temperature rare-gas matrices by vibrational and electronic spectroscopies

Rotational isomerization of 2-chlorobenzaldehyde in low-temperature rare-gas matrices has been investigated by vibrational and electronic spectroscopies with aids of the density functional theory (DFT) and configuration interaction single (CIS) calculations. Infrared spectrum of the less stable O-cis isomer, produced from the more stable O-trans isomer upon UV irradiation, is measured with an FT-IR spectrophotometer. The enthalpy difference between the O-cis and O-trans isomers is estimated to be 9.7±0.2 kJ mol⁻¹ from the temperature dependence of the infrared band intensities. Analyses of the infrared and electronic absorption spectral changes after UV irradiation and the phosphorescence spectra measured at various excitation wavelengths suggest that the rotational isomerization occurs via the intersystem crossing from S₁ to T₁.     

CAST/CNMR: highly accurate C NMR chemical shift prediction system considering stereochemistry

Accurate, practical prediction of ¹³C NMR chemical shifts has been achieved with a new system, CAST/CNMR, taking account of stereochemistry. The CAST/CNMR system has solved the critical problem of the accurate distinction of differences and similarities in stereochemical structures around a specific carbon, which has not yet been achieved by any other database-oriented system for prediction of ¹³C NMR chemical shifts. CAST/CNMR uses a three-dimensional structural database together with a ¹³C NMR spectral database. Absolute/relative configurational and conformational structural information are described by the CAST (CAnonical-representation of STereochemistry) coding method. This paper provides an overview of the CAST/CNMR system, and describes its application to two natural products as examples.