Essential dynamics and sidechain hydrogen bond cluster studies on eosinophil cationic protein

Eosinophil Cationic Protein (ECP) is a member of RNase A superfamily which carries out the obligatory catalytic role of cleaving RNA. It is involved in a variety of biological functions. Molecular dynamics simulations followed by essential dynamics analysis on this protein are carried out with the goal of gaining insights into the dynamical properties at atomic level. The top essential modes contribute to subspaces and to the transition phase. Further, the sidechain-sidechain/sidechain-mainchain hydrogen bond clusters are analyzed in the top modes, and compared with those of crystal structure. The role of residues identified by these methods is discussed in the context of concerted motion, structure and stability of the protein. Received 16 January 2002 Published online 13 September 2002     

Unusual ring annulation during condensation of acetylacetone with pyrrole

During the attempted synthesis of bisdipyrromethane from acid-catalyzed condensation of acetylacetone with pyrrole, an unexpected ring annulation led to the formation of 2,3-dihydro-1H-pyrrolizine-bridged bipyrrole.     

Making unilamellar liposomes using focused ultrasound

Several techniques are available for making large unilamellar vesicles (LUV) with an average diameter of approximately 100 nm, widely employed as model biomembranes as well as vehicles for drug delivery. Here we describe the use of adaptive focused ultrasound (AFU) for the preparation of LUV from multilamellar vesicles (MLV) and studied the effects of ultrasound intensity and number of cycles per burst (CPB) on the average size of vesicles produced. CPB determines the duration of the intermittent pressure wavetrains emitted by the transducer, and the corresponding relaxation periods. Preliminary experiments indicated that CPB controls the size of vesicles assembling after the disruption of MLV by ultrasound and optimum values for obtaining LUV could be iterated. The sizes and lamellarity of LUV were assessed by dynamic light scattering (DLS), cryogenic transmission electron microscopy (cryo-TEM), and fluorescence quenching. AFU provides a simple and easy to use approach for making liposomes with several advantages: it is minimally invasive and involves no loss of material. Precisely controlled wavelengths are employed with a significant reduction in the presence of hot spots, which could destroy some biological materials of interest.     

Micromechanical cohesion force measurements to determine cyclopentane hydrate interfacial properties

Hydrate aggregation and deposition are critical factors in determining where and when hydrates may plug a deepwater flowline. We present the first direct measurement of structure II (cyclopentane) hydrate cohesive forces in the water, liquid hydrocarbon and gas bulk phases. For fully annealed hydrate particles, gas phase cohesive forces were approximately twice that obtained in a liquid hydrocarbon phase, and approximately six times that obtained in the water phase. Direct measurements show that hydrate cohesion force in a water-continuous bulk may be only the product of solid-solid cohesion. When excess water was present on the hydrate surface, gas phase cohesive forces increased by a factor of three, suggesting the importance of the liquid or quasi-liquid layer (QLL) in determining cohesive force. Hydrate-steel adhesion force measurements show that, when the steel surface is coated with hydrophobic wax, forces decrease up to 96%. As the micromechanical force technique is uniquely capable of measuring hydrate-surface forces with variable contact time, the present work contains significant implications for hydrate applications in flow assurance.     

Growth and characterization of large-scale uniform Zinc Sulfide nanowires by a simple chemical reaction technique

Zinc Sulfide (ZnS) nanowires were grown in the pores of anodic alumina membrane. A simple chemical reaction technique was used where pores in the anodic alumina membrane act as reactors. Uniform morphology of nanowires was found using scanning electron microscopy (SEM). X-ray diffraction (XRD) and Micro-Raman spectroscopy revealed the wurtzite nature of ZnS nanowires. UV–visible spectroscopy of nanowires exhibited no blue shift. The room temperature photoluminescence measurement observed an emission peak around 390 nm.     

Anderson-Mott transition driven by spin disorder: spin glass transition and magnetotransport in amorphous GdSi

A zero temperature Anderson-Mott transition driven by spin disorder can be "tuned" by an applied magnetic field to achieve colossal magnetoconductance. Usually this is not possible since spin disorder by itself cannot localize a high density electron system. However, the presence of strong structural disorder can realize this situation, self-consistently generating a disordered magnetic ground state. We explore such a model, constructed to understand amorphous GdSi, and highlight the emergence of a spin glass phase, Anderson-Mott signatures in transport and tunneling spectra, and unusual magneto-optical conductivity. We solve a disordered strong coupling fermion-spin-lattice problem essentially exactly on finite systems and account for all the qualitative features observed in magnetism, transport, and the optical spectra in this system.     

A photonic scheme for the generation of dual linear chirp microwave waveform based on the external modulation technique and its airborne application

Due to high frequency and large time bandwidth product; photonic generation and processing of arbitrary microwave waveforms has been an interesting topic in recent time. Here, a relatively new photonic technique has been proposed for the generation of a dual linear chirp microwave waveform in Ku-band. In this method two single drive Mach–Zehnder Modulators are cascaded at minimum transmission point and in push–pull mode. Theoretical analysis and simulation are developed by giving a complete mathematical model. As the result of this methodology, a dual linear chirp microwave waveform in Ku-band with relatively large bandwidth is generated. Comparative analysis is done in the present cascading technique with dual parallel Mach–Zehnder Modulator (DPMZM) technique. Range-Doppler coupling of the radar system has been investigated with the help of an ambiguity function diagram of the generated waveform. Results have analyzed through MATLAB simulation and verified by experimental results.     

Frustration-induced insulating chiral spin state in itinerant triangular-lattice magnets

We study the double-exchange model at half-filling with competing superexchange interactions on a triangular lattice, combining exact diagonalization and Monte?Carlo methods. We find that in between the expected itinerant ferromagnetic and 120° Yafet-Kittel phases a robust scalar-chiral, insulating spin state emerges. At finite temperatures the ferromagnet-scalar-chiral quantum critical point is characterized by anomalous bad-metal behavior in charge transport as observed in frustrated itinerant magnets R2Mo2O7.