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51.
52.
Sabine Kopec Emilio Martínez-Núñez Juan Soto Daniel Peláez 《International journal of quantum chemistry》2019,119(21):e26008
We present a generalization of the transition state search using chemical dynamics simulations (TSSCDS) methodology (discussed in a previous study) which allows the topographical characterization of intermolecular potential energy surfaces (IPES) for non-covalently bound complexes (vdW-TSSCDS). Starting from a single random input geometry, we show that vdW-TSSCDS is able to globally and automatically locate stationary points of an IPES, even in limiting cases such as extremely flat regions or nontrivial topologies (eg, bifurcation points). The basic idea is the expression of the connectivity matrix in block structure, where diagonal blocks correspond to the isolated fragments and off-diagonal blocks provide the intermolecular connectivity. To this end, we introduce a new definition of bound or not, in a non-covalent sense, utilizing an extra set of van der Waals distances, which encompasses all kinds of non-covalent distances. To discuss the use of the vdW-TSSCDS method, we present a series of 2-body van der Waals systems, namely, Ar-Benzene (3D), N2-Benzene (6D) and H2O-Benzene (9D). Finally, we further illustrate its capabilities by presenting some applications for n-body problems (n > 2), (H2O)2-Benzene (12D) and (H2O)3-Benzene (21D), as well as to a reactive, fully-flexible, system (Benzene-NO2)+ (39D) in which the simultaneous breaking/formation of both covalent and non-covalent interactions takes place. 相似文献
53.
Sabine Ebeling Dieter Matthies Daniel McCarthy 《Phosphorus, sulfur, and silicon and the related elements》2013,188(3-4):265-273
Abstract α-Amidoalkylation of allyttrimethylsilane with methyl-2-chloro-2-(p-chlorobenzoylamino)-ethanoate 1 gave in the presence of Lewis acid racemic methyl-2- (p-chlorobenzoylamino)-4-penteno ate 2. Under the same conditions, vinlytrimethylsilane afforded (±)-trans-2-(p-chlorophenyl)-5,6-dihydro-4-methoxycarbonyl-6-trimethylsilyl-4H-1, 3-oxazine 4 as the major, by n.m.r. data and x-ray crystallography established product. 相似文献
54.
W. Tornow 《Few-Body Systems》2014,55(8-10):581-588
Recent experimental results are presented for reactions involving A = 3 to A = 6 nuclear systems. The emphasis is on unique data obtained at new experimental facilities. It is shown that the inertial confinement fusion facilities OMEGA and NIF provide a largely unexpected opportunity for experimental few-body physics to both obtain data of unprecedented quality and extend previous measurements to energies not accessible in the past. Whenever possible, data are compared to state-of-the-art theoretical calculations. 相似文献
55.
56.
The decarboxylation of L-threonine (2S,3R)-1, L-hydroxyproline (2S,4R)-2 and D-2-azabicyclo[3.3.0]octan-3-carboxylic acid (1R,3R,5R)-5 yield in a simple one-step procedure the corresponding optically active β-amino alcohols (R)-3 and (R)-4 and the bicyclic pyrrolidine derivative (1R,5R)-6 in 72–82% yield and >99% ee. 相似文献
57.
Jan Schwarzbauer Larissa Dsikowitzky Sabine Heim Ralf Littke 《International journal of environmental analytical chemistry》2013,93(6):349-364
This study describes the application of a common analytical procedure adapted for compound-specific stable carbon isotope analyses of riverine contaminants. To evaluate the sensitivity of the analytical method and the precision of the isotopic data obtained, a set of numerous substances at different concentration levels were measured. For most of the anthropogenic contaminants investigated (including chlorinated aliphatics and aromatics, musk fragrances, phthalate-based plasticizers and tetrabutyl tin) acceptable carbon isotope analyses could be obtained down to amounts of approximately 5?ng absolutely applied to the gas chromatograph. These amounts correspond to concentrations in water samples at a natural abundance level of approximately 50–200?ng?L?1 (low to medium contaminated river systems). However, it has to be considered that the precision and the sensitivity of the analytical method depend partially on the chemical properties of the substances measured. Five recovery experiments were conducted to assess changes in carbon isotope ratios during sample preparation and measurement. The compounds selected for these experiments are known riverine contaminants. Isotopic shifts or higher variations of the isotope ratios as a result of the analytical procedures applied were observed only for a couple of contaminants. Furthermore, compound-specific carbon isotope analyses were performed on eight water extracts of the Rhine river. By comparing the variation of the data of several individual compounds with the deviations obtained from the recovery experiments, it was possible to differentiate contaminants with unaffected isotope ratios and substances with significant alterations of the δ13C-values. 相似文献
58.
Dmytro Makarov András Telek Tobias Becker Marie-Kristin von Wrisberg Sabine Schneider Pavel Kielkowski 《Journal of mass spectrometry : JMS》2022,57(3):e4812
The identification and quantification of modified peptides are critical for the functional characterization of post-translational protein modifications (PTMs) to elucidate their biological function. Nowadays, quantitative mass spectrometry coupled with various bioinformatic pipelines has been successfully used for the determination of a wide range of PTMs. However, direct characterization of low abundant protein PTMs in bottom-up proteomic workflow remains challenging. Here, we present the synthesis and evaluation of tandem mass spectrometry tags (TMT) which are introduced via click-chemistry into peptides bearing alkyne handles. The fragmentation properties of the two mass tags were validated and used for screening in a model system and analysis of AMPylated proteins. The presented tags provide a valuable tool for diagnostic peak generation to increase confidence in the identification of modified peptides and potentially for direct peptide-PTM quantification from various experimental conditions. 相似文献
59.
Sabine Briede Anda Barkane Maksims Jurinovs Vijay Kumar Thakur Sergejs Gaidukovs 《Current Opinion in Green and Sustainable Chemistry》2022
Over the years, eco-friendly raw biomass is being investigated to develop novel green monomer and oligomer components for sustainable polymer materials synthesis. The use of naturally obtained biomass can reduce the dependence on petrochemical suppliers and the impact of petroleum prices. Polymer materials obtained from biomass are a competitive alternative comparing with those made from petrochemicals. Domestically and industrially used vegetable oil derivatives are considered widely available, while cellulose derivatives are the most abundant natural polymers. Biobased acrylic polymers developed from vegetable oils and cellulose are very popular nowadays. Using acrylic derivatives of vegetable oils and cellulose as naturally obtained materials leads to long-lasting biopolymers with a wide range of high exploitation properties and applications. The characteristics of vegetable oil- and cellulose-based acrylate resins of high-biorenewable carbon content are suitable for industrial application, while their role is still underestimated. A brief analysis of biomass-derived biopolymer resin compositions, properties, and applications is critically outlined herein. 相似文献
60.
Poullet JB Sima DM Van Huffel S Van Hecke P 《Journal of magnetic resonance (San Diego, Calif. : 1997)》2007,186(2):293-304
Accurate and efficient filtering techniques are required to suppress large nuisance components present in short-echo time magnetic resonance (MR) spectra. This paper discusses two powerful filtering techniques used in long-echo time MR spectral quantitation, the maximum-phase FIR filter (MP-FIR) and the Hankel-Lanczos Singular Value Decomposition with Partial ReOrthogonalization (HLSVD-PRO), and shows that they can be applied to their more complex short-echo time spectral counterparts. Both filters are validated and compared through extensive simulations. Their properties are discussed. In particular, the capability of MP-FIR for dealing with macromolecular components is emphasized. Although this property does not make a large difference for long-echo time MR spectra, it can be important when quantifying short-echo time spectra. 相似文献