The SPR sensor detecting cytosine[bond]cytosine mismatches

We have synthesized the first surface plasmon resonance (SPR) sensor that detects cytosine-cytosine (C[bond]C) mismatches in duplex DNA by immobilizing aminonaphthyridine dimer on the gold surface. The ligand consisting of two 2-aminonaphthyridine chromophores and an alkyl linker connecting them strongly stabilized the C[bond]C mismatches regardless of the flanking sequences. The fully matched duplexes were not stabilized at all under the same conditions. The C[bond]T, C[bond]A, and T[bond]T mismatches were also stabilized with a reduced efficiency. SPR analyses of mismatch-containing 27-mer duplexes were performed with the sensor surface on which the aminonaphthyridine dimer was immobilized. The response for the C[bond]C mismatch in 5'-GCC-3'/3'-CCG-5' was about 83 times stronger than that obtained for the fully matched duplex. The sensor successfully detects the C[bond]C mismatch at the concentration of 10 nM. SPR responses are proportional to the concentration of the C[bond]C mismatch in a range up to 200 nM. Aminonaphthyridine dimer could bind strongly to the C[bond]C mismatches having 10 possible flanking sequences with association constants in the order of 10(6) M(-1). The facile protonation of 2-aminonaphthyridine chromophore at pH 7 producing the hydrogen-bonding surface complementary to that of cytosine was most likely due to the remarkably high selectivity of 1 to the C[bond]C mismatch.     

Total synthesis of scytophycin C. 1. Stereoselective syntheses of the C(1)-C(18) segment and the C(19)-C(31) segment

[structure: see text] Stereoselective total synthesis of scytophycin C, a marine 22-membered macrolide displaying potent activity against a variety of human carcinoma cell lines, has been reported in which the polypropionate structure bearing contiguous asymmetric centers was stereospecifically constructed by using new acyclic stereocontrol. This paper describes stereoselective syntheses of the C(1)-C(18) segment (Segment A) including a trans-disubstituted dihydropyran ring and the C(19)-C(31) segment (Segment B) having eight stereogenic centers.     

Volume phase transition of methacryloyl‐L‐alanine copolymer hydrogels controlled by the terminal groups in the side chains

The volume phase transition of nonionic hydrogels was controlled with a very small amount of variation (pinpoint variation) of the side chains far from the main chain. The copolymer hydrogels poly(methacryloyl‐alanine methyl ester‐co‐methacryloyl‐alanine ethyl ester) [poly(MA‐Ala‐OMe‐co‐MA‐Ala‐OEt)] and poly(methacryloyl‐alanine alkylamide‐co‐methacryloyl‐alanine ethyl ester) [poly(MA‐Ala‐NR₂‐co‐MA‐Ala‐OEt)] were studied to investigate how pinpoint variation controls the volume phase transition. All copolymer hydrogels showed a volume phase transition from a swollen phase to a collapsed phase at a definite MA‐Ala‐OEt content at a specific temperature. The MA‐Ala‐OEt content at the midpoint of the transition linearly decreased with elevation of the temperature, and the decrease was larger for poly(MA‐Ala‐OMe‐co‐MA‐Ala‐OEt) than for poly(MA‐Ala‐NR₂‐co‐MA‐Ala‐OEt). These results suggest that the association of the side chains controlling the swelling character of the hydrogels depends on the interacting ester–ester or ester–amide groups, and the former is larger than the latter. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 56–62, 2001     

Contribution of the photo-Fenton reaction to hydroxyl radical formation rates in river and rain water samples.

The hydroxyl radical (OH radical) formation rates from the photo-Fenton reaction in river and rain water samples were determined by using deferoxamine mesylate (DFOM), which makes a stable and strong complex with Fe(III), resulting in a suppression of the photo-Fenton reaction. The difference between the OH radical formation rates with and without added DFOM denotes the rate from the photo-Fenton reaction. The photoformation rates from the photo-Fenton reaction were in the range of 0.7 - 45.8 x 10(-12) and 2.7 - 32.3 x 10(-12) M s(-1) in river and rain water samples, respectively. A strong positive correlation between the OH radical formation rate from the photo-Fenton reaction and the amount of fluorescent matter in river water suggests that fluorescent matter, such as humic substances, plays an important role in the photo-Fenton reaction. In rain water, direct photolysis of hydrogen peroxide was an important source of OH radicals as well as the photo-Fenton reaction. The contributions of the photo-Fenton reaction to the OH radical photoformation rates in river and rain water samples were in the ranges of 2 - 29 and 5 - 38%, respectively. Taking into account the photo-Fenton reaction, 33 - 110 (mean: 80) and 42 - 110 (mean: 84)% of OH radical sources in river and rain water samples, respectively, collected in Hiroshima prefecture were elucidated.     

Photoluminescence dynamics of coupled quantum dots

We have investigated effects of the strain-compensating spacer layer on photoluminescence (PL) properties of excitons in the multilayered self-assembled quantum dots (SAQDs). The PL decay time of excitons in the sample with a thin spacer layer is longer than that with a thick spacer layer. This is attributed to the lowering of the oscillator strengths owing to reduction of the overlap integral between the electrons and holes envelope functions because of spatially extended electron envelope functions in the growth direction. In addition, the PL intensity of the transverse-magnetic mode in the sample with the thinner spacer layer has been found to be enhanced in the polarized PL measurement from the cleaved edge surface of the samples. These results indicate the possibility of QDs connecting along the growth direction via penetration of the electron envelope function.     

Abilities of 2‐arylmethyloxy‐6‐cyanonaphthalene derivatives to initiate radical and cationic photopolymerizations

An investigation was undertaken to shed much light on the bond‐cleavage mode (heterolysis vs homolysis) of bichromophoric photoinitiators in styrene (St) and 1,2‐epoxycyclohexane (EpC) and then to develop a highly efficient hybrid‐type photoinitiator. Excited‐state 2‐(9‐anthrylmethyloxy)‐6‐cyanonaphthalene in toluene and 1,2‐dimethoxyethane, which were used instead of St and EpC, respectively, underwent both homolytic Ar? OCH₂ bond cleavage and heterolytic ArO? CH₂ bond cleavage to give the corresponding radical‐pair and ion‐pair intermediates. The charge‐separated state characteristic of the naphthol chromophore in the singlet excited state was found to play a pivotal role in this heterolytic bond‐cleavage mode. An inspection of the radical (St) and cationic (EpC) photopolymerization behavior observed in the presence of some 2‐arylmethyloxy‐6‐cyanonaphthalenes led us to conclude that the aforementioned 9‐anthrylmethyloxy‐substituted naphthalene derivative is a candidate for a functional hybrid‐type photoinitiator containing no halogen and/or metal. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 25–31, 2006     

Hydrogen bonding of aromatic amines in hydroxylic solvents 2. Absorption and emission spectroscopy of substituted 7-aminocoumarins and 7-aminocarbostyrils

The absorption and fluorescence spectra of 7-aminocoumarins and 7-aminocarbostyrils with different degrees of alkylation were studied in 2-propanol (IP), polyfluorinated alcohols and water. The spectral properties of substituted 7-aminocoumarins and 7-aminocarbostyrils in hexafluoro-2-propanol (HFP) are very different from those in 2-propanol due to the strong hydrogen-bonding (HB) interaction between the solute and the solvent (HFP). The spectral behaviour can be explained in terms of the strength of the HB interaction which depends on the degree of alkylation of the amino group and the electron affinity of the electron-accepting moiety. The absorption spectra indicate that a structural change at the amino nitrogen is induced on formation of strong hydrogen bonds.     

A practical synthesis of (−)-kazusamycin A (revised)

We describe herein a stereo-controlled and practical synthesis of three key building blocks, namely Segment AB′, Segment D, and Segment E′ needed for the total synthesis of (−)-kazusamycin A.