Ab initio and DFT calculations on the initial step in thiamin catalysis

The diphosphate ester (ThDP) of thiamin (vitamin B₁) is an important cofactor of enzymes within the carbohydrate metabolism. The initial reaction step shared by all ThDP-dependent enzymes is the deprotonation of the C2–H of the thiazolium ring. The replacement of the 4′-amino group by a hydroxyl one in the pyrimidine ring leads to the oxy-ThDP analogue which is known as an antagonist in thiamin catalysis.

Ab initio and DFT calculations on the MP2/6-31G* and B3LYP/6-31G* level were performed to study the proton relay function in thiamin and oxythiamin systems. Both MP2 and B3LYP calculations show significant differences of the reaction coordinate of the ylide formation in the systems. Tautomers, protonated and deprotonated species of both systems show different trends regarding their stability. The influence of correlation effects on the results is discussed by comparison with the HF-SCF/6-31G* data. Frequency calculations on the B3LYP/6-31G* level were performed to characterize the minima and transition state structures, respectively.     

Regiospecific synthesis of mono- and bicyclic 6-alkoxy-2-pyrones and their use in the preparation of substituted aromatics,anthraquinones, and tetracyclic intermediates for 11-deoxyanthracycline synthesis

Several mono- and bicyclic 6-methoxy-2-pyrones having substituents at C4 and C5 can be prepared regiospecifically by either of two routes: (1) regiospecific construction of a glutaconic half-ester followed by dehydrative cyclization, and (2)regiospecific Friedel-Crafts acylation of 6-methoxy-2-pyrones at C5. These pyrones undergo clean and regiospecific Diels-Alder cycloadditions with various unsymmetrical dienophiles, e.g., quinones, unsaturated esters, etc, with subsequent loss of carbon dioxide. In this manner several polycyclic aromatic natural products have been prepared such as chrysophanol, helminthosporin, pachybasin, 2-acetylemodin and the purported structure for orientalone. The utility of this approach for the synthesis of the anthracyclines is demonstrated by its use in the preparation of various tetracyclic intermediates for anthracycline synthesis.     

Magnetische Messungen im Nahordnungsbereich vonHeusler-Phasen (Co,T)2 XY

Magnetic measurements onHeusler alloys (Co,T)₂ XY (field and temperature dependence) are performed around theCurie points (temperature range:T _C–50 toT _C+50). A method otherwise used to get rid of ferromagnetic impurities only ( _g versus 1/H plot) is applied to pure ferromagnets and yields completely new _g (extrap.) versusT curves with a maximumT _max> T _C. The method was applied to pure gadolinium first which has aCurie point within the accessible region of the susceptibility measuring device.

     

Fine structure of the (S(1)<--S(0)) band origins of phthalocyanine molecules in helium droplets

The laser-induced fluorescence (LIF) excitation spectra of free base phthalocyanine (Pc), Mg-Pc, and Zn-Pc molecules in superfluid helium droplets at T=0.38 K have been studied. The spectra reveal the rich vibronic structure of the S(1)<--S(0) electronic transitions. The band origins of the transitions consist of zero phonon lines accompanied by phonon wings, which originate from simultaneous electronic excitation of the molecule and excitation of the collective modes of the helium surrounding it. The phonon wings have discrete structures suggesting localization of some helium atoms in the neighborhood of the molecules. Zero phonon lines of Mg-Pc and Zn-Pc molecules are split into three components, which are separated by 0.2-0.4 cm(-1). Possible mechanism of splitting involves static or dynamic Jahn-Teller interaction of metal-phthalocyanine molecules in the twofold degenerate S(1)((1)E(u)) state with the helium shell.     

The Photoenolization of 2-Methylacetophenone and Related Compounds

A reinvestigation of 2-methylacetophenone ( 1 ) by ns flash photolysis has provided detailed evidence for the reaction sequence of photoenolization. The triplet reaction proceeds adiabatically from the lowest excited triplet state of the ketone, ³ K (1) , to the enol excited triplet state, ³ E (1) , which decays both to enol and ketone ground state. The Z- and E-isomers of the photoenol, Z- E (1) and E- E (1) are formed in about equal yield by the triplet pathway, while direct enolization from the lowest excited singlet state of 1 yields (predominantly) the Z-isomer. Intramolecular reketonization from Z- E (1) to 1 proceeds at a rate of ca. 10⁸s^?1 in cyclohexane, but can be retarded to ca. 10⁴s^?1 in hydrogen-bond-acceptor solvents. The proposed mechanism is summarized in Scheme 1 and rationalized on the basis of a state correlation diagram, Scheme 2. 3,3,6,8-Tetramethyl-1-tetralone ( 2 ) was used as a reference compound with fixed conformational position of the carbonyl group, and some results from a brief investigation of 2,4-dimethylbenzophenone ( 3 ) are also reported.     

Structural variations of N-acetylneuraminic acid,part 19: Synthesis of both epimeric pairs of the 4-C-methyl- and 4-deoxy-4-C-methyl- as well as of the β-methylketoside of 4-deoxy-4-C-methylene-N-acetylneuraminic acid

Summary While the reaction of the 4-oxo-Neu 5 Ac derivative2 a with tributoxy methyl zirconate led exclusively to equatorial 4-C-methyl derivative3 a, the analogous reaction with tetramethyl zirconate yielded a 3:2 mixture of both diastereoisomeres3 a and4 a. After removal of protecting groups the 5-acetamido-3,4-dideoxy-4-C-methyl-D-glycero-D-galacto-2-nonulosonic acid5 a and 5-acetamido-3,4-dideoxy-4-C-methyl-D-glycero-D-talo-2-nonulosonic acid6 a were obtained. The 4-C-methylene derivative was prepared by treatment of the same 4-oxo-derivative with CH₂I₂/Zn/Cp ₂ZrCl₂. Subsequent hydrogenation led to both epimeric 4-deoxy-4-C-methyl derivatives8 a and9 a. Final removal of protecting groups gave the 5-acetamido-3,4,5-trideoxy-4-C-methyl-D-glycero-D-galacto-2-nonulosonic acid10 a respectively the 5-acetamido-2,7-anhydro-4-C-methyl-3,4,5-trideoxy-D-glycero-D-talo-2-nonulosonic acid11 a. The -methylketosides of the 4-deoxy-4-C-methyl- (16) and 4-C-methylene-Neu 5 Ac (15) were prepared via the peracetylated derivatives to obtain modell substrates for enzymatic studies. Thus all free acids were tested for inhibition of CMP-sialate synthease. Only the 4-C-methylene compound15 showed most unexpectedly a strong competitive inhibition of this enzyme.

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Strukturelle Abwandlungen an N-Acetylneuraminsäure, 19. Mitt.: Synthese der beiden Epimerenpaare der 4-C-Methyl- und 4-Deoxy-4-C-methyl- sowie des -Methylketosids der 4-Deoxy-4-C-methylen-N-acetylneuraminsäure. Verhalten gegenüber CMP-Sialat-Synthase

Zusammenfassung Während die Umsetzung des 4-Oxoderivates2 a mit (BuO)₃ MeZr ausschließlich zur equatorialen 4-C-Methylverbindung3 a führt, wurde bei der Reaktion mitMe ₄Zr ein 3:2-Gemisch der beiden Diastereomeren3 a und4 a erhalten. Das 4-C-Methylenderivat7 a wurde durch Reaktion derselben 4-Oxoverbindung mit CH₂I₂/Zn/Cp ₂ZrCl₂ erhalten. Eine anschließende Hydrierung (H₂-Pd/C) führte zu einem trennbaren Germisch der beiden 4-Deoxy-4-C-methylderivative8 a und9 a. Diese Verbindungen konnten durch das Entfernen der Schutzgruppen einerseits in die 5-Acetamido-3,4,5-trideoxy-4-C-methyl-D-glycero-D-galacto-2-nonulosonsäure10 a und 5-Acetamido-2,7-anhydro-4-C-methyl-3,4,5-tridoxy-D-glycero-D-talo-2-nonulosonsäure11 a umgewandelt werden. Die Verbindungen Methyl-5-acetamido-4-C-methylen-3,4,5-trideoxy--D-manno-2-nonulopyranosidonat (15) und Methyl-5-acetemido-4-C-methyl-3,4,5-tridoxy--D-glycero-D-talo-2-nonulopyranosidonat (16) wurden als Modellverbindungen für enzymatische Untersuchungen über peracetylierte Zwischenstufen hergestellt. Überraschenderweise zeigte nur die 4-C-Methylenverbindung15 eine starke kompetitive Hemmung gegenüber CMP-Sialat-Synthase.

     

Photocontrol of DNA binding specificity of a miniature engrailed homeodomain

Control of DNA binding of HDH-3, a 18-residue polypeptide based on the recognition helix of the Q50K engrailed homeodomain, has been achieved. HDH-3 was linked to an azobenzene cross-linker through two cysteine residues in an i, i + 11 spacing. For the thermodynamically stable trans configuration of the cross-linker, the dark-adapted peptide (dad-HDH-3) adopted a mainly alpha-helical structure as judged by circular dichroism (CD) spectroscopy. After irradiation with light of 360 nm, the helical content of the peptide (irrad-HDH-3) was reduced significantly and the CD spectrum of the irradiated peptide resembled that of the largely unstructured, unalkylated peptide. Despite lacking helices-1 and -2 and the N-terminal arm of Q50K engrailed, dad-HDH-3 bound to its natural DNA target sequence TAATCC (QRE) with high affinity (K(D) = 7.5 +/- 1.3 nM). The binding affinity for the mutant DNA sequence, TAATTA (ERE), was reduced significantly (K(D) = 140 +/- 11 nM). Unlike irrad-HDH-3, which like the unalkylated parent peptide displayed only marginal DNA binding specificity, dad-HDH-3 specified base pairs 5 and 6 of QRE with an accuracy rivaling that of the intact wild-type Q50K engrailed homeodomain, making dad-HDH-3 the most specific designed DNA binding miniature homeodomain reported to date. Moreover, DNA binding affinity and specificity of HDH-3 could be controlled externally by irradiation with light.     

Controlling the DNA binding specificity of bHLH proteins through intramolecular interactions

Reversible control of the conformation of proteins was employed to probe the relationship between flexibility and specificity of the basic helix-loop-helix protein MyoD. A fusion protein (apaMyoD) was designed where the basic DNA binding helix of MyoD was stablized by an amino-terminal extension with a sequence derived from the bee venom peptide apamin. The disulfide-stabilized helix from apamin served as a nucleus for a helix that extended for a further ten residues, thereby holding apaMyoD's DNA recognition helix in a predominantly alpha-helical conformation. The thermal stability of the DNA complexes of apaMyoD was increased by 13 degrees C relative to MyoD-bHLH. Measurements of the fluorescence anisotropy change on DNA binding indicated that apaMyoD bound to E-box-containing DNA sequences with enhanced affinity relative to MyoD-bHLH. Consequently, the DNA binding specificity of apaMyoD was increased 10-fold.     

Synthesis and structures of cis- and trans-bis(alkyneselenolato)platinum(II) complexes

The reaction of 2 equiv of LiSeCC-n-C(5)H(11) (1) with cis-PtCl(2)(Ph(3)P)(2) (2) gives a mixture of the cis and trans isomers of Pt(Ph(3)P)(2)(SeCC-n-C(5)H(11))(2) (3), which slowly isomerizes in CH(2)Cl(2) to the preferred trans form trans-3. The closely related cis-[Pt(dppf)(2)(SeCC-n-C(5)H(11))(2)] (4) (dppf = bis(diphenylphosphino)ferrocene) was prepared by a similar metathetical reaction using the platinum chloride complex of the chelating dppf to impose the cis geometry. The structures of the cis and trans complexes have been investigated in solution by heteronuclear NMR ((31)P, (77)Se, and (195)Pt) and, in the cases of trans-3 and 4, characterized in the solid state by single-crystal X-ray diffraction. Changing the coordination geometry from cis to trans induces significant changes in the structural and spectroscopic parameters, which do not comply with the previously anticipated donor-acceptor properties of selenolate ligands.