Selecting folded proteins from a library of secondary structural elements

A protein evolution strategy is described by which double-stranded DNA fragments encoding defined Escherichia coli protein secondary structural elements (alpha-helices, beta-strands, and loops) are assembled semirandomly into sequences comprised of as many as 800 amino acid residues. A library of novel polypeptides generated from this system was inserted into an enhanced green fluorescent protein (EGFP) fusion vector. Library members were screened by fluorescence activated cell sorting (FACS) to identify those polypeptides that fold into soluble, stable structures in vivo that comprised a subset of shorter sequences ( approximately 60 to 100 residues) from the semirandom sequence library. Approximately 108 clones were screened by FACS, a set of 1149 high fluorescence colonies were characterized by dPCR, and four soluble clones with varying amounts of secondary structure were identified. One of these is highly homologous to a domain of aspartate racemase from a marine bacterium (Polaromonas sp.) but is not homologous to any E. coli protein sequence. Several other selected polypeptides have no global sequence homology to any known protein but show significant alpha-helical content, limited dispersion in 1D nuclear magnetic resonance spectra, pH sensitive ANS binding and reversible folding into soluble structures. These results demonstrate that this strategy can generate novel polypeptide sequences containing secondary structure.     

Modification of Glassy Carbon Electrode With Single‐Walled Carbon Nanotubes and α‐Silicomolybdate: Application to Sb(III) Detection

A simple procedure was developed to prepare a glassy carbon (GC) electrode modified with single‐walled carbon nanotubes (SWCNTs) and polyoxometalate. With immersing SWCNTs modified GC electrode in silicon polyoxomolybdate (α‐SiMo₁₂O₄₀^4?) solution (direct deposition) for a short period of time (2–10 s) oxoanion adsorbed strongly and irreversibly on SWCNTs. Cyclic voltammograms of the α‐SiMo₁₂O₄₀^4? incorporated‐SWCNTs indicates three well‐defined and reversible redox couples with surface confined characteristic at wide pH range (1–7). The surface coverage (Γ) of α‐SiMo₁₂O₄₀^4? immobilized on SWCNTs was 2.14 (±0.11)×10^?9 mol cm^?2 indicating high loading ability of SWCNTs for polyoxometalate. The charge transfer rate constant (k_s) of three redox couples of adsorbed α‐SiMo₁₂O₄₀^4? were 9.20 (±0.20), 8.02 (±0.20), and 3.70 (±0.10) s^?1, respectively, indicate great facilitation of the electron transfer between α‐SiMo₁₂O₄₀^4? and CNTs. In this research the attractive mechanical and electrical characteristics of CNTs and unique properties and reactivity of polyoxometalates were combined. The modified electrode in buffer solution containing Sb(III) shows a new redox system at 0.38 V in pH 1. The voltammetric peak current increased with increasing Sb(III) concentration. The differential pulse voltammetry (DPV) technique was used for detection micromolar concentration of antimony. Furthermore, the interference effects various electroactive compounds on voltammetric response of Sb(III) were negligible. Finally the ability of the modified electrode for antimony detection in real samples was evaluated.     

Initiating free radical polymerization

The kinetics and mechanism of the initiation and reinitiation of free radical polymerization is reviewed. The importance of understanding the kinetics, specificity and efficiency of initiation and chain transfer when predicting polymerization kinetics and polymer composition is highlighted. These factors are particularly important when making low molecular weight polymers and in living or controlled polymerization processes. Examples of RAFT polymerization and catalytic chain transfer are provided.     

A practical and sustainable two-component Minisci alkylation via photo-induced EDA-complex activation

An operationally simple, open-air, and efficient light-mediated Minisci C–H alkylation method is described, based on the formation of an electron donor–acceptor (EDA) complex between nitrogen-containing heterocycles and redox-active esters. In contrast to previously reported protocols, this method does not require a photocatalyst, an external single electron transfer agent, or an oxidant additive. Achieved under mildly acidic and open-air conditions, the reaction incorporates primary-, secondary-, and tertiary radicals, including bicyclo[1.1.1]pentyl (BCP) radicals, along with various heterocycles to generate Minisci alkylation products in moderate to good yields. Additionally, the method is exploited to generate a stereo-enriched, hetereoaryl-substituted carbohydrate.

An operationally simple, open-air, and efficient light-mediated Minisci C–H alkylation method is described, based on the formation of an electron donor–acceptor (EDA) complex between nitrogen-containing heterocycles and redox-active esters.     

Facile Chemoselective synthesis of 2‐(2‐(Methoxycarbonyl)‐3‐oxo‐2,3‐dihydrobenzofuran‐2‐yl)benzoic acids and 3H,3’H‐Spiro[benzofuran‐2,1′‐isobenzofuran]‐3,3′‐dione derivatives

Oxidation of some derivatives of 4b,9b–dihydroxyindeno[1,2‐b]benzofuran‐10‐one have been investigated in detail using lead(IV) acetate in acetic acid under reflux conditions and periodic acid in aqueous ethanol at room temperature. We realized that during the first 5–15 minutes of the oxidation reactions in lead(IV) acetate/acetic acid system, 3H,3’H‐spiro[benzofuran‐2,1′‐isobenzofuran]‐3,3′‐dione derivatives have been synthesized chemo selectively, while, if the reaction mixtures stirred for additional 3 hours, the main products would be 2‐(2‐(Methoxycarbonyl)‐3‐oxo‐2,3‐dihydrobenzofuran‐2‐yl)benzoic acids. Moreover, room temperature oxidation of 4b,9b–dihydroxyindeno[1,2‐b]benzofuran‐10‐ones by periodic acid (H₅IO₆), leads to the formation of 3H,3’H‐spiro[benzofuran‐2,1′‐isobenzofuran]‐3,3′‐dione derivatives in good to excellent yields.     

The highest background radiation school in the world and the health status of its students and their offspring

Although the average effective human dose from natural background radiation is about 2.4 mSv per year, the students of the Saeid Nafisi school in Ramsar received effective doses of about 250 mSv while studying there for over 5 years. The goal of this project was a retrospective study of the health status of former students of this school and their offspring. The list of the students of the Saeid Nafisi school (high background radiation) and Taleghani and Kashani schools (ordinary background radiation) was provided by the Department of Education. After matching sex, age and socioeconomic level and obtaining their consent, part 1 of the specifically designed questionnaire was filled out by interview, and clinical examinations were recorded in part 2 of the questionnaire by a physician. The data were analysed using Statistical Package for the Social Sciences 16. Our study shows that 88.1 % of general examinations of high background radiation school students were normal as compared with 85.7 % for control group. There were no significant differences. This study is interesting and unique. It reveals that there is no health emergency related to these high radiation doses. We recommend continuing the health supervision of this population in the future.     

Walking metals: catalytic difunctionalization of alkenes at nonclassical sites

Migration of metals along a carbon chain is triggered by two of the most common organometallic elementary steps – β-hydride (β-H) elimination and alkene hydrometallation. This process heralds a new future for creating bonds at carbon sites that fall outside the tenets of the conventional wisdom for reactivity and bond formation, and provides an opportunity to leverage β-H elimination to advance the very reaction of alkene difunctionalization it is intrinsically predestined to disrupt. Almost four decades since its genesis, the early adventure for alkene difunctionalization by metal migration was sporadic, and its later development went on a hiatus primarily due to original impetus on arresting β-H elimination for vicinal alkene difunctionalization. With the recent surge on alkene difunctionalization, efforts have been gradually shifting to harnessing the process of β-H elimination to difunctionalize alkenes at sites other than the classical vicinal carbons, termed henceforth nonclassical reaction sites for pedagogical simplicity. In this review article, we extricate and examine the origin and the development of such reactions over the years. This review covers a wide range of reactions for the difunctionalization of alkenes at geminal (1,1), allylic (1,3) and remote (1,n) carbon sites with a variety of coupling partners. These reactions have enabled engineering of complex molecular frameworks with the generation of new carbon–carbon (C–C)/C–C, C–C/C–heteroatom (halogens, O, N, B) and C–B/C–B bonds. The development of these unique transformations is also presented with mechanistic hypotheses and experimental evidences put forward by researchers. Judged by the number of reports emerging recently, it is now strikingly evident that the field of alkene difunctionalization by metal migration has begun to gain momentum, which holds a great future prospect to develop into a synthetic method of enormous potential.

Alkenes can be difunctionalized at unconventional carbon sites by the migration of transition metals through β-hydride elimination and hydrometallation steps.     

Nickel-Catalyzed α-Carbonylalkylarylation of Vinylarenes: Expedient Access to γ,γ-Diarylcarbonyl and Aryltetralone Derivatives

We report a Ni-catalyzed regioselective α-carbonylalkylarylation of vinylarenes with α-halocarbonyl compounds and arylzinc reagents. The reaction works with primary, secondary, and tertiary α-halocarbonyl molecules, and electronically varied arylzinc reagents. The reaction generates γ,γ-diarylcarbonyl derivatives with α-secondary, tertiary, and quaternary carbon centers. The products can be readily converted to aryltetralones, including a precursor to Zoloft, an antidepressant drug.     

Application of the response surface methodology for modeling demulsification of crude oil emulsion using a demulsifier

The main objective of this research is to determine the capability of four surface-active compounds namely poly(ethylene glycol) distearate, N,N-dimethyldodecylamine N–oxide solution, polyoxyethylene (10) tridecyl ether, and polyethylene glycol sorbitan monooleate as demulsifier agents in breaking water-in-crude oil emulsion through the bottle test method. The influence of temperature, concentration, water content, and pH on demulsification efficiency of the studied demulsifiers was investigated via the response surface methodology (RSM) and the central composite design method (CCD) was applied to design the experiments. The optimum values of input variables to obtain the maximum water separation efficiency were determined based on the developed model by analyze of variance (ANOVA). The R-squared values demonstrate that the developed models could appropriately predict the experimental results of all demulsifier agents.