Investigation of bovine ubiquitin conformers separated by high-field asymmetric waveform ion mobility spectrometry: Cross section measurements using energy-loss experiments with a triple quadrupole mass spectrometer

High-field asymmetric waveform ion mobility spectrometry (FAIMS) was used to separate gas-phase conformers of bovine ubiquitin produced by electrospray ionization. These conformers were sampled by a triple quadrupole mass spectrometer where energy-loss experiments, following the work of Douglas and co-workers, were used to determine their cross sections. The measured cross sections for some conformers were readily altered by the voltages applied to the interface ion optics, therefore very gentle mass spectrometer interface conditions were required to preserve gas-phase conformers separated by FAIMS. Cross sections for 19 conformers (charge states +5 through +13) were measured. Two conformers for the +12 charge state, which were readily separated in FAIMS, were found to have similar cross sections. Based on a method to calibrate the collision gas thickness, the cross sections measured using the FAIMS/energy-loss method were compared with literature values determined using drift tube ion mobility spectrometry. The comparison illustrated that the conformers of bovine ubiquitin that were identified using drift tube ion mobility spectrometry were also observed using the FAIMS device.     

Synthesis of a selective estrogen receptor β-modulator via asymmetric phase-transfer catalysis

An efficient asymmetric synthesis of selective estrogen receptor β-modulator (S)-4-bromo-9a-butyl-8-chloro-6-fluoro-7-hydroxy-1,2,9,9a-tetrahydro-fluoren-3-one was developed. The route features a chemoselective aromatic chlorination reaction, an asymmetric phase-transfer-catalyzed alkylation of an indanone with efficient ee upgrade by racemate crystallization, and a robust bromination reaction using imidazole as an in situ bromine trap to avoid overreaction. The synthesis proceeds in 34% yield over 8 steps from 2-fluoroanisole, and provides material with >99.5% ee.     

Analysis of rabbit tear proteins by high-pressure liquid chromatography/electrospray ionization mass spectrometry

The aim of this study was to develop a fast and reliable analytical procedure for the display of the protein components of tears that can be used to differentiate the status of the ocular surface. Using this new procedure, we analyzed the tear protein components following a corneal wound in the rabbit. Calibrated 10-microL glass, fire-polished capillary micropipettes were used to collect tears from New Zealand White rabbits prior to and daily for 9 days following a unilateral 6-mm diameter centrally placed anterior keratectomy. Tear proteins were eluted by a reversed-phase high-performance liquid chromatography (RP-HPLC) column and the tear protein profile was monitored by electrospray ionization (ESI) mass spectrometry positive total ion current (TIC) chromatography. Tear proteins were reliably separated into 17 peaks, each of which contained one or a number of protein components. The molecular weight of each protein component was determined by on-line ESI. Major tear protein components, lactoferrin, lysozyme (minimally detectable in rabbit tears), albumin, lipocalin, lipophilin and beta2-microglobulin, were tentatively identified by this method. Based on the mass spectrometric data, beta2-microglobulin was found to be glycosylated with N-acetylhexosamine. ESI-positive TIC chromatograms and mass spectra revealed comparative differences in the tear protein spectra after corneal wounding. One day after wounding, rabbit lysozyme with a molecular weight of 14,717 Da was found to be 8-fold higher in the tears of wounded eyes when compared with tears from unwounded eyes. It dropped back to normal 3 days after wounding. The expression of an unidentified tear protein with the molecular weight of 16,060 Da was also elevated after corneal wounding and returned to normal level by day 5. In this study, LC/ESI-MS was developed as a fast, reproducible and simple method for the identification and analysis of many of the protein components of the tears. Importantly, this technique also allows quantification of each component resolved in the chromatogram. This method is very suitable for mapping peptides and proteins (<80 kDa) in tears.     

Stereoselectivity of Dienamine [4 + 2] Cycloadditions Synthesis of Functionalised Decalins and Drimanes

The [4 + 2] cycloaddition stereoselectivity of dienamines 1–4 with dimethyl fumarate and fumaronitrile has been investigated, and functionalised decalins 21–40 have been prepared by elimination of Me₂NH from cycloadducts 7–11 and 15–20 ; in the context of the synthesis of drimane sesquiterpenes, the reduction of dienediesters 29 and 30 is also described.     

Diastereoselective synthesis of cyclopropane amino acids using diazo compounds generated in situ

A simple and high-yielding method for the preparation of cyclopropane amino acids is described. The novel method involves the one-pot cyclopropanation of readily available dehydroamino acids using aryl and unsaturated diazo compounds generated in situ from the corresponding tosylhydrazone salts. It was found that thermal 1,3-dipolar cycloaddition followed by nitrogen extrusion gave the cyclopropane amino acid derivatives with good E selectivity, while reactions in the presence of meso-tetraphenylporphyrin iron chloride gave predominantly the corresponding Z isomers. The synthetic utility of this process was demonstrated in the synthesis of (+/-)-(Z)-2,3-methanophenylalanine [(+/-)-(Z)-1], the anti-Parkinson (+/-)-(E)-2,3-methano-m-tyrosine [(+/-)-(E)-2], and the natural product (+/-)-coronamic acid [(+/-)-3].     

Classical and quantum mechanical infrared echoes from resonantly coupled molecular vibrations

The nonlinear response function associated with the infrared vibrational echo is calculated for a quantum mechanical model of resonantly coupled, anharmonic oscillators at zero temperature. The classical mechanical response function is determined from the quantum response function by setting variant Planck's over 2pi-->0, permitting the comparison of the effects of resonant vibrational coupling among an arbitrary number of anharmonic oscillators on quantum and classical vibrational echoes. The quantum response function displays a time dependence that reflects both anharmonicity and resonant coupling, while the classical response function depends on anharmonicity only through a time-independent amplitude, and shows a time dependence controlled only by the resonant coupling. In addition, the classical response function grows without bound in time, a phenomenon associated with the nonlinearity of classical mechanics, and absent in quantum mechanics. This unbounded growth was previously identified in the response function for a system without resonant vibrational energy transfer, and is observed to persist in the presence of resonant coupling among vibrations. Quantitative agreement between classical and quantum response functions is limited to a time scale of duration inversely proportional to the anharmonicity.     

Mechanism of fracture in glassy polymers. II. Survey of crazing response during crack propagation in several polymers

Of nine glassy polymers so far investigated, eight yield evidence that fracture propagation involves the formation and breaking of craze material. All eight produce fracture surfaces exhibiting interference colors to one extent or another and even the colorless areas cause low angle x-ray scattering. Ranked in terms of decreasing ease of colored surface formation, these polymers are poly(methyl methacrylate), poly(ethyl methacrylate), polystyrene, acrylonitrile—styrene copolymer, poly-α-methylstyrene, poly(vinyl acetate), a polyhydroxy ether, and polycarbonate. Only rigid poly(vinyl chloride) has failed to show evidence of precrack craze formation.     

Degradation of poly(vinyl chloride) by u.v. radiation—II: Mechanism

The mechanism of the light-induced degradation of solid poly(vinyl chloride) (PVC) has been investigated, and an overall reaction scheme has been developed, based on values of the quantum yields for the primary photoproducts. Only a very small fraction (0.2%) of the excited polyenes induces the degradation of PVC, primarily by photocleavage of the allylic CCl bond. The high instability of β-chloroalkyl radicals is responsible for the chain dehydrochlorination that leads to formation of polyenes. In the absence of O₂, chain scissions and crosslinking are postulated to originate mainly from α-chloroalkyl radicals through β-cleavage of CC bonds and radical coupling, respectively. In the presence of O₂, the chain dehydrochlorination still proceeds, together with an oxidative chain process which yields, via peroxy and alkoxy radicals, hydroperoxides, ketones and peroxide crosslinks. Cleavage of the polymer backbone results most probably from the decomposition of tertiary alkoxy radicals by a carbon-carbon β-scission process.     

The short N [bond] F bond in N(2)F(+) and how Pauli repulsion influences bond lengths. Theoretical study of N(2)X(+), NF(3)X(+), and NH(3)X(+) (X [double bond] F, H)

Exceptionally short N [bond] F bond distances of only 1.217 A (crystal) and 1.246 A (gas phase) have been reported for N(2)F(+), making it the shortest N [bond] F bond ever observed. To trace the origin of this structural phenomenon, we have analyzed the model systems N(2)X(+), NF(3)X(+), and NH(3)X(+) (X [double bond] F, H) using generalized gradient approximation density functional theory at BP86/TZ2P. In good agreement with experiment, the computations yield an extremely short N [bond] F bond for N(2)F(+): we find N [bond] F bond distances in N(2)F(+), NF(4)(+), and NH(3)F(+) of 1.245, 1.339, and 1.375 A, respectively. The N [bond] X bonding mechanisms are quantitatively analyzed in the framework of Kohn-Sham MO theory. At variance with the current hypothesis, reduced steric and other Pauli repulsion (of substituents or lone pairs at N with F) rather than the extent of s [bond] p hybridization of N (i.e., sp versus sp(3)) are responsible for the much shorter N [bond] F distance in N(2)F(+) compared to NF(4)(+). The results for our nitrogen compounds are furthermore discussed in the more general context of how bond lengths are determined by both bonding and repulsive orbital interactions.