Dissociative photoionization of adenine following valence excitation

We present results on the valence level excitation, ionization and dissociation of adenine, using time-of-flight mass spectrometry and synchrotron radiation, in the vacuum ultraviolet (VUV) range of 12-21 eV. The measurements were performed using a gas-phase (Ne) harmonics filter in order to eliminate contributions from higher-order harmonics. Mass spectra were obtained using the photoelectron-photoion coincidence technique (PEPICO). The relative abundances for each ionic fragment and their mean kinetic energy release have been determined from the analysis of the corresponding peak shapes in the mass spectra. Comparison with the available photoelectron spectra and previous measurements allowed the assignment of the main features in the spectra. A discussion on the dissociative photoionization channels of this molecule has also been included. Due to our harmonics-free incident photon beam we were able to propose new appearance energy (AE) for the most important ionic channels in this energy range. The precursor ion, C(5)H(5)N(5)+, is the most abundant species (40% at 15 eV and 20% at 20 eV), which confirms the high stability of adenine upon absorption of VUV photons. We have observed other intense fragment ions such as: C(4)H(4)N(4)+, C(3)H(3)N(3) (+), C(2)H(2)N(2)+ and HCNH+. The production of the neutral HCN fragment represents up to 40% of the dissociative channels for this molecule as induced by VUV photons.     

Tetrahydroxy-p-benzoquinone as a source of polydentate O-donor ligands. Synthesis, crystal structure, and magnetic properties of the [Cu(bpy)(dhmal)]2 dimer and the two-dimensional [{SiW12O40}{Cu2(bpy)2(H2O)(ox)}2].16H2O inorganic-metalorganic hybrid

The use of tetrahydroxy-p-benzoquinone as a slow source of dihydroxymalonato and oxalato ligands led to the isolation under open-air mild reaction conditions of five different compounds, two of them prepared for the first time: [Cu(bpy)(dhmal)]2 (1) and [{SiW12O40}{Cu2(bpy)2(H2O)(ox)}2].16H2O (5) (bpy, 2,2'-bipyridine; dhmal, dihydroxymalonate; ox, oxalate). A possible mechanism for the oxidation of the benzoquinone to give the croconate dianion, which undergoes further ring-opening oxidation to decompose into dihydroxymalonate and oxalate, is proposed. All compounds have been characterized by elemental analysis, thermogravimetry, infrared spectroscopy, and powder X-ray diffraction. Single-crystal X-ray diffraction, electron paramagnetic resonance, and magnetic susceptibility measurements have been performed for compounds 1 and 5. A complete band assignment of the experimental FT-IR spectra is given through comparison with the ones calculated using density functional theory (DFT). The neutral dimer 1 constitutes the first structurally characterized example of a transition metal-dhmal complex, and it contains two copper atoms bridged by two dihydroxymalonato ligands acting in a mu2-kappa3O,O',O":kappa1O coordination fashion, so that an equatorial-axial Cu2(mu2-O)2 rhomboid core is formed. On the other hand, the inorganic-metalorganic hybrid compound 5 shows a two-dimensional arrangement of Keggin polyanions linked by one of the Cu atoms of the oxalate cationic dimers to give layers parallel to the (10) plane, the remaining ox-Cu-bpy fragments acting as interlamellar separators. In both cases, magnetic and EPR results are discussed with respect to the crystal structure of the compounds and, for compound 1, also with respect to DFT calculations of the exchange coupling constant.     

Experiments on small (H2)N clusters

The nucleation process of small hydrogen clusters has been studied in detail with space, time, and number size resolution on the basis of supersonic expansions of the gas through a cryogenic nozzle operating in the thermal range 24 < T <110 K. The diagnostic of the jet medium is based on high sensitivity (few photons/sec) Raman spectroscopy with very high spatial resolution ( $\approx 2~\mu$ m), enabling for quantitative measurements with time resolution in the domain of nanoseconds. Temperatures down to 0.1 K have been attained in the jet at a collisional rate low enough to avoid sudden freezing of the gas. Clusters between two and eight molecular units are observed size-resolved. Features of the ortho-ortho and ortho-para hydrogen dimers, and the role of three-body collisions for nascent dimers and trimers are reported.     

Probing the Bioactive Conformation of an Archetypal Natural Product HDAC Inhibitor with Conformationally Homogeneous Triazole‐Modified Cyclic Tetrapeptides

Fooling enzymes with mock amides : Analogues of apicidin, a cyclic‐tetrapeptide inhibitor of histone deacetylase (HDAC), were designed with a 1,4‐ or 1,5‐disubstituted 1,2,3‐triazole in place of a backbone amide bond to fix the bond in question in either a trans‐like or a cis‐like configuration. Thus, the binding affinity of distinct peptide conformations (see picture) could be probed. One analogue proved in some cases to be superior to apicidin as an HDAC inhibitor.

     

Non-Covalent Interactions in a Nickel(II) Complex with Benzilate and 1,10-Phenanthroline

Abstract  

A new mixed-ligand nickel(II) coordination compound [Ni(bz)₂(phen)₂] (1) (bz = benzilate and phen = 1,10-phenanthroline) has been synthesized by refluxing nickel(II) acetate with benzilic acid and 1,10-phenantholine. Compound 1 has been characterized by elemental analysis, IR and electronic absorption spectroscopy, magnetic measurements, thermogravimetric analysis and single-crystal X-ray diffraction The crystal of 1 belongs to monoclinic crystal system, space group C2/c and its unit cell parameters are a = 25.881(3), b = 11.1728(15), c = 17.609(2) ? and β = 124.104(3)°. The effect of non-covalent interactions, such as π···π and C–H···π, on the 3D supramolecular organization of this molecular complex is analyzed.     

Comparison of stir bar sorptive extraction and membrane-assisted solvent extraction as enrichment techniques for the determination of pesticide and benzo[a]pyrene residues in Brazilian sugarcane juice

The biodegradation of the organophosphorus insecticide methyl parathion (MP) in aqueous environment by bacteria isolated from river sediment has been studied. Two species of bacteria which show strong MP degradation ability are identified as Shewanella and Vibrio parahaemolyticus. The biodegradation of MP proceeded rapidly with the formation of a series of intermediate products, which were analyzed using a combination of GC/MS and HPLC/ESI-TOFMS techniques. The major products tentatively identified include a series of reduced products of MP. Results demonstrate that the coupling of TOFMS to HPLC enhances further the capability of LC-MS in the identification of polar organic species in complex environmental samples. Degradation pathways leading to the formation of these products are proposed which involves first the reduction of nitro to amino group in MP, followed by combination with some intrinsic matters of bacteria. The mechanism and products from biodegradation are quite different from those of photocatalytic process for which the main intermediates included methyl paraoxon and 4-nitrophenol.     

Diffraction aperture non-ideal behaviour of air coupled transducers array elements designed for NDT

Air coupled piezoelectric ultrasonic array transducers are a novel tool that could lead to interesting advances in the area of non-contact laminar material testing using Lamb wave's propagation techniques. A key issue on the development of such transducers is their efficient coupling to air media (impedance mismatch between the piezoelectric material and air is 90 dB or more). Adaptation layers are used in order to attain good matching and avoid possible serious signal degradation. However, the introduction of these matching layers modify the transducer surface behaviour and, consequently, radiation characteristics are altered, making the usual idealization criteria (of uniform surface movement) adopted for field simulation purposes inaccurate. In our system, we have a concave linear-array transducer of 64 elements (electrically coupled by pairs) working at 0.8 MHz made of PZ27 rectangular piezoceramics (15 mm x 0.3 mm) with two matching layers made of polyurethane and porous cellulose bonded on them. Experimental measurements of the acoustic aperture of single excited array elements have shown an increment on the geometrical dimensions of its active surface. A sub-millimeter vibrometer laser scan has revealed an extension of the aperture beyond the supposed physical single array element dimensions. Non-uniform symmetric apodized velocity surface vibration amplitude profile with a concave delay contour indicates the presumed existence of travelling wave phenomena over the surface of the outer array matching layer. Also, asymptotic propagation velocities around 2500 m/s and attenuation coefficient between 15 and 20 dB/mm has been determined for the travelling waves showing clear tendencies. Further comparisons between the experimental measurements of single array element field radiation diagram and simulated equivalent aperture counterpart reveal good agreement versus the ideal (uniform displaced) rectangular aperture. For this purpose an Impulse Response Method (IRM) has been used.     

A new minor dimmeric ester from seeds of Cassia fistula L. (Leguminosae)

Bioactivity-guided fractionation of n-hexane phase from MeOH extract of the seeds of Cassia fistula L. (Leguminosae) yielded two bioactive substances against Cladosporium cladosporioides and C. sphaerospermum. After spectroscopic analysis, these compounds were characterised as the known benzyl 2-hydroxy-3,6-dimethoxybenzoate and its dimer dibenzyl 2,2'-dihydroxy-3,6,3″,6″-tetramethoxy-biphenyl-1,1'-dicarboxylate, which showed a new structural arrangement.