Intermolecular interactions in uracil–nitrous acid complexes: structures,binding energy,topological properties,and nuclear magnetic resonance study

Molecular interactions between uracil and nitrous acid (U–NA) [C₄N₂O₂H₄? NO₂H] have been studied using B3LYP, B3PW91, and MP2 methods with different basis sets. The optimized geometries, harmonic vibrational frequencies, charge transfer, topological properties of electron density, nucleus‐independent chemical shift (NICS), and nuclear magnetic resonance one‐ and two‐bonds spin–spin coupling constants were calculated for U–NA complexes. In interaction between U and NA, eight cyclic complexes were obtained with two intermolecular hydrogen bonds N(C)HU…N(O) and OH_NA…O_U. In these complexes, uracil (U) simultaneously acts as proton acceptor and proton donor. The most stable complexes labeled, UNA1 and UNA2, are formed via NH bond of U with highest acidity and CO group of U with lowest proton affinity. There is a relationship between hydrogen bond distances and the corresponding frequency shifts. The solvent effect on complexes stability was examined using B3LYP method with the aug‐cc‐pVDZ basis set by applying the polarizable continuum model (PCM). The binding energies in the gas phase have also been compared with solvation energies computed using the PCM. Natural bond orbital analysis shows that in all complexes, the charge transfer takes place from U to NA. The results predict that the Lone Pair (LP)(O)_U → σ*(O? H) and LP(N(O)_NA → σ*(N(C)? H)_U donor–acceptor interactions are most important interactions in these complexes. Atom in molecule analysis confirms that hydrogen bond contacts are electrostatic in nature and covalent nature of proton donor groups decreases upon complexation. The relationship between spin–spin coupling constant (^1hJ_H…_Y and ^2hJ_H…_Y) with interaction energy and electronic density at corresponding hydrogen bond critical points and H‐bonds distances are investigated. NICS used for indicating of aromaticity of U ring upon complexation. © 2013 Wiley Periodicals, Inc.     

POLYROTAXANE WITH π-CONJUGATED PORPHYRIN AND POLYAZOMETHINE SYSTEMS PREPARED FROM A TYPE OF PORPHYRIN-DIALDEHYDE AND COMPLEX OF β-CYCLODEXTRIN WITH 1,4-PHENYLENEDIAMINE

The synthesis of 5,15-bis[4-(methoxycarbonyl)phenyl]-10,20-diphenylporphyrin (2) and its reduction to 5,15-bis[4-(hydroxymethyl)phenyl]-10,20-diphenylporphyrin (3), and so its oxidation to provide 5,15-bis(4-formylphenyl)-10,20-diphenylporphyrin (4) are reported. The copolymer possessing β-cyclodextrin (β-CD), π-conjugated porphyrin and polyazomethine systems was synthesized by the polycondensation of porphyrin-dialdehyde monomer (4) and β-cyclodextrin/1,4-phenylenediamine complex (5). The monomers and the copolymer were characterized by UV-Vis, 1H-NMR and IR spectra. Furthermore, 1H-NMR and FT-IR spectra confirmed locating the aromatic ring of 1,4-phenylenediamine molecule in the center of β-cyclodextrin cavity.     

Molecular potential energy surface constructed from ab initio interpolation for HCN− + H reaction and deuterated analogues

A classical study for constructing potential energy surface from ab initio electronic energy of molecular fragments was presented for HCN^? + H reaction and deuterated analogues. The classical trajectory was studied on this surface to determine the reaction probability. Reaction probability was used to calculate others observable properties like rate constant and cross section. Rate constants expressions were reported for all reactions. Influence of translation energy of fragments on the reaction probability and reaction cross section was also studied. Nonlinear least-squares fitting was also used to calculate the rate constants expressions. Deuterium was used instead of hydrogen atom to observe the effect of mass of attacking atoms and target molecule on the reaction probability and reaction rate.     

Synthesis of spiroindolo[2,1‐b]quinazolines from Huisgen zwitterions and tryptanthrin‐malononitrile adducts

Functionalized spiroindolo[2,1‐b]quinazolines are obtained from the reaction between tryptanthrin‐malononitrile adducts and Huisgen zwitterionic intermediates, generated by addition reaction of aromatic N‐heterocycles with acetylenic esters. The reaction is diastereoselective leading to the formation of a single diastereoisomer. The structure of a typical product established by X‐ray crystallography.     

Synthesis, spectroscopy, thermal analysis, magnetic properties and biological activity studies of Co(II) and Co(II) complexes with Schiff base dye ligands

Three azo group-containing Schiff base ligands, namely 1-{3-[(3-hydroxypropylimino) methyl]-4-hydroxyphenylazo}-4-nitrobenzene (2a), 1-{3-[(3-hydroxypropylimino) methyl]-4-hydroxyphenylazo}-2-chloro-4-nitrobenzene (2b) and 1-{3-[(3-hydroxypropylimino) methyl]-4-hydroxyphenylazo}-4-chloro-3-nitrobenzene (2c) were prepared. The ligands were characterized by elemental analysis, FTIR spectroscopy, UV-Vis spectroscopy, 13C- and 1H-NMR spectroscopy and thermogravimetric analysis. Next the corresponding copper(II) and cobalt(II) metal complexes were synthesized and characterized by the physicochemical and spectroscopic methods of elemental analysis, FTIR spectroscopy, UV-Vis spectroscopy, magnetic moment measurements, and thermogravimetric analysis (TGA) and (DSC). The room temperature effective magnetic moments of complexes are 1.45, 1.56, 1.62, 2.16, 2.26 and 2.80 B.M. for complexes 3a, 3b, 3c, 4a 4b, and 4c, respectively, indicating that the complexes are paramagnetic with considerable electronic communication between the two metal centers.     

A modified Chebyshev ϑ‐weighted Crank–Nicolson method for analyzing fractional sub‐diffusion equations

This study presents a robust modification of Chebyshev ? ‐weighted Crank–Nicolson method for analyzing the sub‐diffusion equations in the Caputo fractional sense. In order to solve the problem, by discretization of the sub‐fractional diffusion equations using Taylor's expansion a linear system of algebraic equations that can be analyzed by numerical methods is presented. Furthermore, consistency, convergence, and stability analysis of the suggested method are discussed. In this framework, compact structures of sub‐diffusion equations are considered as prototype examples. The main advantage of the proposed method is that, it is more efficient in terms of CPU time, computational cost and accuracy in comparing with the existing ones in open literature.     

A reversible fluorescence “ON–OFF–ON” sensor for sequential detection of F− and Cu2+ ions and its application as a molecular-scale logic device and security keypad lock

A new azoimine receptor, R₁, was synthesized by Schiff base condensation of 4-(4-butylphenyl) azophenol and 2,6-diaminopyridine and acts as a colorimetric and fluorometric chemosensor for F^? and also toward Cu²⁺ ions in aqueous environment. UV–Vis absorption and fluorescent emission spectra were employed to study the sensing process. Emission study was performed to examine the dual sensing ability of the obtained probe with sequential addition of F^? followed by Cu²⁺ and vice versa. The receptor is an efficient “ON–OFF” fluorescent probe for the fluoride ion. Also, R₁ + F^? operated as an “OFF–ON” fluorescent sensor for Cu²⁺ ions. Considering emission intensity and absorption wavelength for F^? and Cu²⁺ ions, a molecular system was developed with the ability to mimic the functions of XNOR logic gating on the molecular level. In addition, R₁ behaved as a molecular security keypad lock with F^? and Cu²⁺ inputs. The keypad lock operation is particularly important, as the output of the system depends not only on the proper combination but also on the order of input signals, creating the correct password that can be used to “open” this molecular keypad lock through strong fluorescence emission at 460?nm.     

Intensified electrochemical hydrogen storage capacity of multi-walled carbon nanotubes supported with Ni nanoparticles

The electrochemical hydrogen storage properties of Ni-supported multi-walled carbon nanotube (Ni/MWCNT) electrodes were investigated using charge/discharge (C&D) and cyclic voltammetry (CV) techniques. Nickel NPs were deposited on the MWCNT surface, which was first chemically oxidized by H₂SO₄ and HNO₃ (3:1, v/v). Hydrogen storage was carried out by using the Ni/MWCNT electrode as the working electrode in the electrochemical cell. A set of various current densities were applied to the cell to produce (C&D) cycles, and it became optimum corresponding to 1.5 mA current. According to the electrochemical test results, the highest electrochemical discharge capacity of 1625 mAh g^?1 was obtained for the electrode with ratio of 4:1 (MWCNTs to Ni) in the initial cycle, which corresponded to 6.07 wt% H₂. The storage capacity was increased and reached to 4909 mAh g^?1 (18.34 wt% H₂) after 20 cycles, and the electrode maintained the specific capacity as cycling continued. Thus, the Ni/MWCNT electrode displays an excellent cycle stability and a high capacity reversibility. CV measurements also showed that the electrochemical adsorption and desorption amount of hydrogen was increased by Ni loading onto the CNTs and indicated that the electrochemical hydrogen adsorption of the electrode has an activated period.