Photochemical and Photophysical Studies of 3-Amino-6-lodoacridine and the Inactivation of λ Phage

Abstract— The photochemistry and photophysics of 3-amino-6-io-doacridine (Acr-I) was studied. Photolysis (350 nm) of Acr-I (free base) generates products consistent with a free radical intermediate in methanol, benzene and carbon tetrachloride. The Acr-I hydrochloride is shown to bind to calf thymus DNA and to the self-complementary dinucleotide cytidylyl-(3′-5′)-guanosine (CpG) minidu-plex in a manner similar to that of proflavine (Acr-NH₂), a known DNA intercalator. The Acr-I is shown to more efficiently nick supercoiled plasmid DNA pBR322 upon 350 nm or 420 nm photolysis than Acr-NH₂. The efficiency of Acr-I-sensitized DNA nicking is not oxygen dependent. Photolysis of the Acr-I/(CpG)₂ complex leads to cleavage of the dinucleotide and to cytidine base release by selective damage to a specific ribose moiety. Dinucleotide cleavage occurs equally well in the presence or absence of oxygen, thereby eliminating a singlet oxygen- or peroxyl radical-mediated process. Photolysis of Acr-I in the presence of a mononucleotide (GMP) or a non-self-complementary dinucleotide (uridylyl-[3′-5′]-cytidine– UpC) does not lead to fragmentation and base release. Similarly, photolysis of the Acr-NH₂/(CpG)₂ complex does not lead to fragmentation and base release. The data indicate that photolysis of an iodinated intercalator bound to CpG or plasmid DNA generates an intercalated aryl radical and that the reactive intermediate initiates a sequence of reactions that efficiently nick nucleic acids. The inactivation of Λ phage sensitized by Acr-I with UV (350 nm) light is oxygen independent but with visible (420 nm) light is strongly oxygen dependent. The Acr-I fluoresces more intensely when excited at 446 than at 376 nm. Thus, UV photolysis may lead to C-I bond homolysis and free radical formation, a process that is not energetically feasible with visible light. The results demonstrate the difficulty of extrapolating model studies involving simple molecules and DNA to understanding the mechanism of viral inactivation with a particular sensitizer.     

The synthesis of phenanthrodibenzothiophenes

The synthesis of phenanthro[1,2-c]dibenzothiophene (6) , phenanthro[4,3-c]dibenzothiophene (10) , phenanthro[2,1-a]dibenzothiophene (14) , phenanthro[3,4-a]dibenzothiophene (16) , phenanthro[1,2-a]dibenzothiophene (19) , phenanthro[2,1-b]dibenzothiophene (20) , 8-methylphenanthro[3,2-a]dibenzothiophene (24) , 7-methylphenanthro[1,2-a]dibenzothiophene (25) , phenanthro[3,4-a]dibenzothiophene (27) , phenanthro[4,3-a]-dibenzothiophene (28) , 6-methylphenanthro[2,3-a]dibenzothiophene (31) , and 5-methylphenanthro[4,3-a]dibenzothiophene (32) is described.     

The synthesis of novel polycyclic heterocyclic ring systems via photocyclization. 10. Synthesis and structure determination of naphtho[1′,2′:4,5]thieno[3,2-a]-4,7-phenanthroline

Naphtho[1′,2′:4,5]thieno[3,2-a]-4,7-phenanthroline, a novel hexacyclic ring system has been synthesized in four steps. The ¹H and ¹³C nmr assignments have been made using two-dimensional nmr techniques. The tertiary helical structure was determined by X-ray crystallographic analysis.     

Structural isomerism of mono- and sesquiterpenoid skeletons

A generator of chemical structures (CONGEN) has been utilized to investigate two aspects of the structural isomerism of mono- and sesquiterpenoid skeletons: (1) the scope of possible isomers under various structural constraints; and (2) the scope of possible isomers based on a mechanistic model which allows interactive exploration of reactions of formation and interconversion. The possibilities, even under severe constraints, are many more than the structural types commonly encountered in natural. These results indicate the potential danger of structural assignment based in part on biogenic grounds.     

Efficient synthesis of various acycloalkenyl derivatives of pyrimidine using cross-metathesis and Pd(0) methodologies

Novel acyclonucleosides (9a-d, 10a-d, 18a,b and 19a,b) have been prepared using Pd(0) and cross-metathesis methodologies. The allylic N-alkylation under Tsuji-Trost conditions was used to introduce the nucleobase, while the Suzuki-Miyaura reaction afforded C-5 substituted uracil analogues. The cross-metathesis performed with a ruthenium catalyst was used to provide new acycloalkenyl nucleosides. The antiviral activities of all final compounds have been evaluated.     

The synthesis of novel polycyclic heterocyclic ring systems via photocyclization. 14. 14-methylbenzo[h]naphtho-[1′2′:4,5]thieno[2,3-c][1,6]naphthyridine

Benzo[h]naphtho[1′2′:4,5]thieno[2,3-c][1,6]naphthyridine, a novel polycyclic heterocyclic ring system, has been synthesized as the 14-methyl derivative 8 in four steps from known intermediates. The structure of 8 is supported by assignment of the proton and the protonated carbon atoms by 2D-nmr techniques (COSY and a carbon-hydrogen one-bond coupling experiment).     

The preparation and molecular structure oftrans-[MoCl2(PMe2Ph)4]

Summary The compoundtrans-[MoCl₂(PMe₂Ph)₄] has been prepared by the reduction of MoCl₅ (by Mg) or of [MoCl₃(PMe₂Ph)₃] (by LiBuⁿ) in the presence of PMe₂Ph in tetrahydrofuran (THF). It has _eff=2.84 B.M. and crystallises in space group P1 witha=11.591(3),b=12.931(3),c=12.703(3) Å, = 95.28(2), =105.97(2), =103.54(2)°. Refinement of the structure gave R=0.036. The Mo-Cl and Mo-P distances average 2.443(6) and 2.534(8) Å, respectively.Low-valent phosphine complexes of the Group VI metals continue to attract much attention because of their involvement in studies of the catalytic activation of dinitrogen⁽¹⁾, dihydrogen(^{2, 3}), alkenes and alkynes(⁴). As a by-product during our studies of dinitrogen(¹) and hydride(²) complexes of molybdenum and tungsten, we obtainedtrans-[MoCl_2- (PMe₂Ph)₄] as yellow, paramagnetic crystals (_eff= 2.84 B.M.). We first obtained the compound during the attempted synthesis ofcis-[Mo(N₂)₂(PMe₂Ph)₄] by reduction of MoCl₅ with Mg in the presence of PMe₂Ph (see Experimental). Upon identification of the compound we found that it could be readily synthesised by treatment of [MoCl₃(PMe₂Ph)₃]⁽⁵⁾ with LiBuⁿ in THF in the presence of PMe₂Ph (experimental).The complex was shown to have thetrans structure by x-ray analysis (Figure). Analogues oftrans-[MoCl₂(PMe₂Ph)₄] have been prepared, namely [CrCl₂(Me₂PCH₂CH₂PMe₂)₂]⁽⁶⁾,trans- [MoCl₂(PMe₃)₄]⁽⁷⁾, [WCl₂(PMe₂Ph)₄]⁽⁸⁾ and [WCl₂(PMe₃)₄]⁽⁴⁾, of which onlytrans-[MoCl₂(PMe₃)₄] has been examined by X-rays⁽⁷⁾. Its principal structural parametersi.e. d(Mo-Cl)= 2.420(6), d(Mo-P)_av=2.496(3) Å⁽⁶⁾ are close to those found here fortrans-[MoCl₂(PMe₂Ph)₄].     

Synthesis of some benzimidazole‐, benzothiazole‐ and pyridine‐derived chelating agents

Procedures are given for the preparation of new linear bidentate, tetradentate and tripodal heptadentate ligands incorporating benzimidazole, benzothiazole and pyridyl groups. The compounds were characterized by their nmr, uv and mass spectra. The crystal and molecular structure is reported for a chiral benzothiazole derived from camphoric acid.     

Rotational relaxation in the Ar—N2 system

The first (Z⁽¹⁾) and second (Z⁽²⁾) approximations to the rotational number of the Ar—N₂ system are compared for a range of temperatures. Although Z⁽¹⁾ and Z⁽²⁾ differ by a significant amount their difference remains nearly constant as a function of temperature. The effects of mass and potential parameter variations on the rotational relaxation time are also studied. When the mass of the incoming atom is decreased Z⁽²⁾ goes through a minimum while Z⁽¹⁾ steadily increases.