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41.
Araúzo-Bravo MJ Fujii S Kono H Ahmad S Sarai A 《Journal of the American Chemical Society》2005,127(46):16074-16089
Sequence dependence of DNA conformation plays a crucial role in its recognition by proteins and ligands. To clarify the relationship between sequence and conformation, it is necessary to quantify the conformational energy and specificity of DNA. Here, we make a systematic analysis of dodecamer DNA structures including all the 136 unique tetranucleotide sequences at the center by molecular dynamics simulations. Using a simplified conformational model with six parameters to describe the geometry of adjacent base pairs and harmonic potentials along these coordinates, we estimated the equilibrium conformational parameters and the harmonic potentials of mean force for the central base-pair steps from many trajectories of the simulations. This enabled us to estimate the conformational energy and the specificity for any given DNA sequence and structure. We tested our method by using sequence-structure threading to estimate the conformational energy and the Z-score as a measure of specificity for many B-DNA and A-DNA crystal structures. The average Z-scores were negative for both kinds of structures, indicating that the potential of mean force from the simulation is capable of predicting sequence specificity for the crystal structures and that it may be used to study the sequence specificity of both types of DNA. We also estimated the positional distribution of conformational energy and Z-score within DNA and showed that they are strongly position dependent. This analysis enabled us to identify particular conformations responsible for the specificity. The presented results will provide an insight into the mechanisms of DNA sequence recognition by proteins and ligands. 相似文献
42.
S. Ahmad M. S. Chaudhary A. Mannan I. H. Qureshi 《Journal of Radioanalytical and Nuclear Chemistry》1983,78(2):375-383
The concentration of certain toxic and essential elements in various brands of tea consumed locally were determined using instrumental neutron activation analysis. Transference of these elements into the drinkable portion was studied by brewing and boiling tea leaves for two minutes and the approximate intake was calculated from this data. The toxic effects of Hg, Se, As, Br and Sb are briefly discussed. 相似文献
43.
Summary A method for semiquantitative determination of thiourea, thiocyanate, and sulfide is described. It involves making circular spots or rings on chromatoplates using the circular thin layer Chromatographic apparatus. The method is based on sensitivity and specificity of spot reactions and comparison of the color intensity of a circular spot with that of sensitivity standards. The accuracy of the method is ± 5% and the procedure is rapid, simple and economical.
Zusammenfassung Ein Verfahren zur halbquantitativen Bestimmung von Thioharnstoff, Thiocyanat und Sulfid wurde beschrieben. Es beruht auf der chromatographischen Herstellung kreisförmiger Flecken oder Ringe auf Dünnschichtplatten. Mit empfindlichen und spezifischen Tüpfelreaktionen wurden die Flecken gefärbt und die Farbintensität mit Standardproben verglichen. Die Genauigkeit beträgt ± 5%.相似文献
44.
Ferdous Khan Diana Kwek E. Kronfli S.R. Ahmad 《Polymer Degradation and Stability》2007,92(8):1640-1644
Excimer laser-induced crosslinking of ethylene-propylene-diene elastomer using a trace amount of photoinitiator, 1-hydroxy cyclohexyl phenyl ketone, was evaluated. Gel content measurements on irradiated samples showed that crosslinking was a natural consequence in all, which had undergone exposure to laser radiation. Degree of crosslinking was found to be linear with the laser exposure energy and was found to reach a saturation value of approximately 80% at about 100 J. However, for thicker samples the dependence of gel content i.e. crosslinking was found to be exponential over the range of laser exposure energy in excess of 200 J. As is expected, the tensile strength increased significantly with the increase of crosslinking. The band at 808 cm−1 in the infrared spectra was attributed to the 5-ethylidene-2-norbornene (ENB) content in the polymer. The ENB has a double bond which is considered to be consumed with a high radiochemical yield and thereby contributes to the increase in rate of the formation of intermolecular bridge density. 相似文献
45.
Christian C. Van de Sande Syed Zahoor Ahmad Friedrich Borchers Karsten Levsen 《Journal of mass spectrometry : JMS》1978,13(11):666-670
Gaseous protonated aziridine ions are produced at the threshold from β-phenoxyethylamine molecular ions. The evidence for this is collisional activation spectra, using various precursors (including labelled analogues) under electron impact and field ionization conditions. Partial conversion to the acyclic \documentclass{article}\pagestyle{empty}\begin{document}$ {\rm CH}_{\rm 3} {\rm CH = }\mathop {\rm N}\limits^ + {\rm H}_{\rm 2} $\end{document} isomer occurs at higher electron energies and is rationalized by means of a potential energy surface constructed from energetic data. 相似文献
46.
Summary A simple method based on circular thin-layer chromatography is described for the separation of aromatic and,-unsaturated aldehydes as their isonicotinoyl hydrazones. The development of the chromatoplate is complete within 2 minutes.
Zusammenfassung Aromatische und,-ungesättigte Aldehyde lassen sich durch ringförmige Dünnschichtchromatographie ihrer Isonikotinoylhydrazone trennen. Die Entwicklung der Dünnschichtplatten ist innerhalb 2 Minuten zu bewerkstelligen.
Résumé On décrit une méthode simple fondée sur la chromatographie circulaire en couche mince pour séparer les aldéhydes aromatiques et, non saturés, sous forme de leurs hydrazones isonicotinoyles. Le développement de la chromatoplaque est complet en deux minutes.相似文献
47.
7-Ethyl-10-hydroxycamptothecin (SN-38) is an active metabolite of Irinotecan (CPT-11), an anticancer pro-drug. To support clinical pharmacokinetic studies for liposome based formulation of SN-38 (LE-SN38) in cancer patients, a rapid, simple and sensitive liquid chromatography tandem mass spectrometry (LC-MS/MS) method has been developed and validated for the quantification of total SN-38 in human plasma. Sample preparation was carried out by one-step protein precipitation using cold acetonitrile with 0.5% acetic acid (v/v). Camptothecin was used as an internal standard (IS). Chromatographic separation of SN-38 and IS was achieved using a Synergi Hydro-RP column (C(18), 50 x 2 mm, 4 micro m), with a gradient elution of acetonitrile and 0.1% acetic acid. After ionization in electrospray source (positive ions), the acquisition was performed in the multiple reactions monitoring mode. Quantitation was accomplished using the precursor-->product ion combinations of m/z 393.1-->349.2 for SN-38 and 349.1-->305.1 for IS. The quantification limit of 0.05 ng/mL was achieved by using much lower volume (0.2 mL) of plasma and in the presence of LE-SN38. The method was validated over the concentration range of 0.05-400 ng/mL. Accuracy was within +/-12% of nominal at all concentration levels. Inter-day and intra-day precisions expressed as percentage coefficient of variation (%CVs) for quality control (QC) samples were less than 14 and 5%, respectively. 相似文献
48.
Dehestani A Lam WH Hrovat DA Davidson ER Borden WT Mayer JM 《Journal of the American Chemical Society》2005,127(10):3423-3432
Osmium tetroxide is reduced by molecular hydrogen in the presence of ligands in both polar and nonpolar solvents. In CHCl3 containing pyridine (py) or 1,10-phenanthroline (phen), OsO4 is reduced by H2 to the known Os(VI) dimers L2Os(O)2(mu-O)2Os(O)2L2 (L2 = py2, phen). However, in the absence of ligands in CHCl3 and other nonpolar solvents, OsO4 is unreactive toward H2 over a week at ambient temperatures. In basic aqueous media, H2 reduces OsO4(OH)n(n-) (n = 0, 1, 2) to the isolable Os(VI) complex, OsO2(OH)4(2-), at rates close to that found in py/CHCl3. Depending on the pH, the aqueous reactions are exergonic by deltaG = -20 to -27 kcal mol(-1), based on electrochemical data. The second-order rate constants for the aqueous reactions are larger as the number of coordinated hydroxide ligands increases, k(OsO4) = 1.6(2) x 10(-2) M(-1) s(-1) < k(OsO4(OH)-) = 3.8(4) x 10(-2) M(-1) s(-1) < k(OsO4(OH)2(2-)) = 3.8(4) x 10(-1) M(-1) s(-1). The observation of primary deuterium kinetic isotope effects, k(H2)/k(D2) = 3.1(3) for OsO4 and 3.6(4) for OsO4(OH)-, indicates that the rate-determining step in each case involves H-H bond cleavage. Density functional calculations and thermochemical arguments favor a concerted [3+2] addition of H2 across two oxo groups of OsO4(L)n and argue against H* or H- abstraction from H2 or [2+2] addition of H2 across one Os=O bond. The [3+2] mechanism is analogous to that of alkene addition to OsO4(L)n to form diolates, for which acceleration by added ligands has been extensively documented. The observation that ligands also accelerate H2 addition to OsO4(L)n highlights the analogy between these two reactions. 相似文献
49.
Munir M. Ahmad Martin R. Bryce Joan Halfpenny Larry Weiler 《Tetrahedron letters》1984,25(38):4275-4278
Bis(triphenylphosphoranylidene)ammonium iodide (PPN+I?) forms a 2:3 complex with TCNQ [(PPN)2(TCNQ)3(CH3CN)2] that provides an example of a TCNQ complex containing acetonitrile in the crystal lattice; the material is a semi-conductor with trimerised TCNQ stacks. 相似文献
50.
Diastereoisomers (1S,2R,3S)-, (1R,2R,3S)-, (1R,2S,3S)- and (1S,2S,3S)-2-methyl-1-phenyl-1,3-butanediols were prepared by simple and convenient strategies using two different chemo-enzymatic approaches for the reduction of racemic 2-methyl-1-phenyl-1,3-butanedione, both involving in situ racemization. The first method comprised a one-pot microbial reduction coupled with a chemical reduction, while in the second method, stepwise chemo-enzymatic reductions were performed. 相似文献