Molecular Docking and Molecular Dynamics Study on the Effect of ERCC1 Deleterious Polymorphisms in ERCC1-XPF Heterodimer

Excision repair cross complementation group 1 (ERCC1) is an important protein in the nucleotide excision repair (NER) pathway, which is responsible for removing DNA adducts induced by platinum based compounds. The heterodimer ERCC1-XPF is one of two endonucleases required for NER. Genetic variations or polymorphisms in ERCC1 gene alter DNA repair capacity. Reduced DNA repair (NER) capacity may result in tumors and enhances cisplatin chemotherapy in cancer patients, which functions by causing DNA damage. Therefore, ERCC1 variants have the potential to be used as a strong candidate biomarker in cancer treatments. In this study we identified five variants V116M, R156Q, A199T, S267P, and R322C of ERCC1 gene as highly deleterious. Further structural and functional analysis has been conducted for ERCC1 protein in the presence of three variants V116M, R156Q, and A199T. Occurrence of theses variations adversely affected the regular interaction between ERCC1 and XPF protein. Analysis of 20 ns molecular dynamics simulation trajectories reveals that the predicted deleterious variants altered the ERCC1-XPF complex stability, flexibility, and surface area. Notably, the number of hydrogen bonds in ERCC1-XPF mutant complexes decreased in the molecular dynamic simulation periods. Overall, this study explores the link between the ERCC1 deleterious variants and cisplatin chemotherapy for various cancers with the help of molecular docking and molecular dynamic approaches.     

Synthesis,characterization & in vitro antimicrobial‐antioxidant studies of novel N,1‐diphenyl‐4,5‐dihydro‐1H‐1,2,4‐triazol‐3‐amine derivatives

A new series of 1,2,4‐triazole was designed, synthesized, and characterized as remarkable antimicrobial and antioxidant agents. These heterocycles have been prepared from the cyclization reactions of Schiff bases 3 ( a‐k ) with phenylhydrazine by refluxing under the alkaline medium. The Schiff bases in turn were realized in good yields from the condensation reactions of N‐phenylurea with different aromatic aldehydes. The structures of the intermediates 3 ( a‐k ) and final heterocycles 4 ( a‐k ) have been fully characterized through their spectral parameters.     

210Po in the environment: insight into the naturally occurring polonium isotope

Journal of Radioanalytical and Nuclear Chemistry - Polonium is rapidly emerging as an international environmental health concern primarily because of the recent rise in hydraulic fracturing...     

Nitrile Metabolizing Enzymes in Biocatalysis and Biotransformation

Nitrile metabolizing enzymes, i.e., aldoxime dehydratase, hydroxynitrile lyase, nitrilase, nitrile hydratase, and amidase, are the key catalysts in carbon nitrogen triple bond anabolism and catabolism. Over the past several years, these enzymes have drawn considerable attention as prominent biocatalysts in academia and industries because of their wide applications. Research on various aspects of these biocatalysts, i.e., sources, screening, function, purification, molecular cloning, structure, and mechanisms, has been conducted, and bioprocesses at various scales have been designed for the synthesis of myriads of useful compounds. This review is focused on the potential of nitrile metabolizing enzymes in the production of commercially important fine chemicals such as nitriles, carboxylic acids, and amides. A number of opportunities and challenges of nitrile metabolizing enzymes in bioprocess development for the production of bulk and fine chemicals are discussed.     

Lewis acid metal ion-exchanged MAPO-36 molecular sieve: Characterisation and catalytic activity

Magnesium aluminophosphate-36 (MAPO-36) molecular sieve was synthesised hydrothermally and subjected to wet ion-exchange with Fe³⁺, Zn²⁺, La³⁺ or Ce³⁺. They were characterised by using XRD, SEM, temperature programmed desorption (TPD) of ammonia and thermogravimetric analysis (TGA). The XRD patterns of ion-exchanged MAPO-36 exhibit similar features to that of MAPO-36, which revealed no structural degradation during ion-exchange. TPD (ammonia) showed selective ion-exchange of strong acid sites for Fe³⁺, La³⁺ and Ce³⁺ but not for Zn²⁺. Based on the results of TGA the actual species involved in the ion-exchange is suggested to be M(OH)₂⁺, which upon calcination converted to MO⁺ where M is Fe³⁺, La³⁺ or Ce³⁺. tert-Butylation of phenol was carried out in the vapour phase as a probe reaction to examine the catalytic activity of MAPO-36 and ion-exchanged MAPO-36 molecular sieves. The ion-exchanged catalysts were found to be more active than the parent MAPO-36 and also showed higher selectivity to 4-tert-butylphenol.     

Effect of nanoscale CeO<Subscript>2</Subscript> on PVDF-HFP-based nanocomposite porous polymer electrolytes for Li-ion batteries

New poly (vinylidenefluoride-co-hexafluoro propylene) (PVDF-HFP)/CeO₂-based microcomposite porous polymer membranes (MCPPM) and nanocomposite porous polymer membranes (NCPPM) were prepared by phase inversion technique using N-methyl 2-pyrrolidone (NMP) as a solvent and deionized water as a nonsolvent. Phase inversion occurred on the MCPPM/NCPPM when it is treated by deionized water (nonsolvent). Microcomposite porous polymer electrolytes (MCPPE) and nanocomposite porous polymer electrolytes (NCPPE) were obtained from their composite porous polymer membranes when immersed in 1.0 M LiClO₄ in a mixture of ethylene carbonate/dimethyl carbonate (EC/DMC) (v/v = 1:1) electrolyte solution. The structure and porous morphology of both composite porous polymer membranes was examined by scanning electron microscope (SEM) analysis. Thermal behavior of both MCPPM/NCPPM was investigated from DSC analysis. Optimized filler (8 wt% CeO₂) added to the NCPPM increases the porosity (72%) than MCPPM (59%). The results showed that the NCPPE has high electrolyte solution uptake (150%) and maximum ionic conductivity value of 2.47 × 10⁻³ S cm⁻¹ at room temperature. The NCPPE (8 wt% CeO₂) between the lithium metal electrodes were found to have low interfacial resistance (760 Ω cm²) and wide electrochemical stability up to 4.7 V (vs Li/Li⁺) investigated by impedance spectra and linear sweep voltammetry (LSV), respectively. A prototype battery, which consists of NCPPE between the graphite anode and LiCoO₂ cathode, proves good cycling performance at a discharge rate of C/2 for Li-ion polymer batteries.     

Infrared matrix isolation study of the thermal and photochemical reactions of ozone with dimethylzinc

The matrix isolation technique has been combined with infrared spectroscopy and theoretical calculations to explore the reaction of (CH3)2Zn with O3 over a range of time scales. Upon twin jet deposition, an initial cage pair complex was observed, along with formation of the novel H3COZnCH3 species. Subsequent UV irradiation destroyed the complex and greatly increased the yield of H3COZnCH3. An extensive set of bands were seen for this molecule, and (18)O spectroscopic data were obtained as well. The identification of this species was supported by theoretical calculations at the B3LYP/6-311++g(d,2p) level. Merged jet deposition led to a very different set of products, including H2CO, CH3OH and C2H6, identifications that were confirmed by (18)O substitution. In addition, a new variable length concentric deposition technique was developed to permit study of the time scales between twin (relatively short) and merged (relatively longer) reaction times. Mechanistic inferences for this reaction are discussed.