The siderocalin/enterobactin interaction: a link between mammalian immunity and bacterial iron transport

The siderophore enterobactin (Ent) is produced by enteric bacteria to mediate iron uptake. Ent scavenges iron and is taken up by the bacteria as the highly stable ferric complex [Fe (III)(Ent)] (3-). This complex is also a specific target of the mammalian innate immune system protein, Siderocalin (Scn), which acts as an antibacterial agent by specifically sequestering siderophores and their ferric complexes during infection. Recent literature suggesting that Scn may also be involved in cellular iron transport has increased the importance of understanding the mechanism of siderophore interception and clearance by Scn; Scn is observed to release iron in acidic endosomes and [Fe (III)(Ent)] (3-) is known to undergo a change from catecholate to salicylate coordination in acidic conditions, which is predicted to be sterically incompatible with the Scn binding pocket (also referred to as the calyx). To investigate the interactions between the ferric Ent complex and Scn at different pH values, two recombinant forms of Scn with mutations in three residues lining the calyx were prepared: Scn-W79A/R81A and Scn-Y106F. Binding studies and crystal structures of the Scn-W79A/R81A:[Fe (III)(Ent)] (3-) and Scn-Y106F:[Fe (III)(Ent)] (3-) complexes confirm that such mutations do not affect the overall conformation of the protein but do weaken significantly its affinity for [Fe (III)(Ent)] (3-). Fluorescence, UV-vis, and EXAFS spectroscopies were used to determine Scn/siderophore dissociation constants and to characterize the coordination mode of iron over a wide pH range, in the presence of both mutant proteins and synthetic salicylate analogues of Ent. While Scn binding hinders salicylate coordination transformation, strong acidification results in the release of iron and degraded siderophore. Iron release may therefore result from a combination of Ent degradation and coordination change.     

Contrasting reactivity and cancer cell cytotoxicity of isoelectronic organometallic iridium(III) complexes

Replacing the N,N-chelating ligand 2,2'-bipyridine (bpy) in the Ir(III) pentamethylcyclopentadienyl (Cp*) complex [(η(5)-C(5)Me(5))Ir(bpy)Cl](+) (1) with the C,N-chelating ligand 2-phenylpyridine (phpy) to give [(η(5)-C(5)Me(5))Ir(phpy)Cl] (2) switches on cytotoxicity toward A2780 human ovarian cancer cells (IC(50) values of >100 μM for 1 and 10.8 μM for 2). Ir-Cl hydrolysis is rapid for both complexes (hydrolysis equilibrium reached in <5 min at 278 K). Complex 2 forms adducts with both 9-ethylguanine (9-EtG) and 9-methyladenine (9-MeA), but preferentially with 9-EtG when in competition (ca. 85% of total Ir after 24 h). The X-ray crystal structure of [(η(5)-C(5)Me(5))Ir(phpy)(9-EtG-N7)]NO(3)·1.5CH(2)Cl(2) confirms N7 binding to guanine. Two-dimensional NMR spectra show that complex 2 binds to adenine mainly through N1, consistent with density functional theory (DFT) calculations. DFT calculations indicate an interaction between the nitrogen of the NH(2) group (9-MeA) and carbons from phpy in the adenine adduct of complex 2. Calculations show that the most stable geometry of the adduct [(η(5)-C(5)Me(5))Ir(phpy)(9-EtG-N7)](+) (3b) has the C6O of 9-EtG orientated toward the pyridine ring of phpy, and for [(η(5)-C(5)Me(5))Ir(phpy)(9-MeA-N1)](+) (4(N1)a), the NH(2) group of 9-EtA is adjacent to the phenyl ring side of phpy. Complex 2 is more hydrophobic than complex 1, with log P values of 1.57 and -0.95, respectively. The strong nucleobase binding and high hydrophobicity of complex 2 probably contribute to its promising anticancer activity.     

Recognition of volatile compounds as markers in geographical discrimination of Spanish extra virgin olive oils by chemometric analysis of non-specific chromatography volatile profiles

Chromatographic profiles obtained by headspace solid-phase microextraction (HS-SPME) coupled with gas chromatography (GC) were processed as continuous and non-specific signals through multivariate analysis techniques in order to select and identify the most discriminate volatile marker compounds related to the geographical origin of extra virgin olive oils. The blind analysis of the chromatographic profiles was carried out on several steps including preliminary mathematical treatments, explorative analysis, feature selection and classification. The results obtained through the application of stepwise linear discriminant analysis (SLDA) method revealed a perfect discrimination between the different Spanish geographical regions considered (La Rioja, Andalusia and Catalonia). The assignment success rate was 100% in both classification and prediction by using cross validation procedure. In addition, it must be noted that the proposed strategy was able to verify the geographical origin of the samples involving only a reduced number of discriminate retention times selected by the stepwise procedure. This fact emphasizes the quality of the accurate results obtained and encourages the feasibility of similar procedures in olive oil quality and traceability studies. Finally, volatile compounds corresponding to the predictors retained were identified by gas chromatography-mass spectrometry (GC-MS) for a chemical interpretation of their importance in quality virgin olive oils.     

Solvent and Media Effects on the Photophysics of Naphthoxazole Derivatives

The photophysical properties of 2‐phenyl‐naphtho[1,2‐d][1,3]oxazole, 2(4‐N,N‐dimethylaminophenyl)naphtho[1,2‐d][1,3]oxazole and 2(4‐N,N‐diphenylaminophenyl) naphtho[1,2‐d][1,3]oxazole were studied in a series of solvents. UV–Vis absorption spectra are insensitive to solvent polarity whereas the fluorescence spectra in the same solvent set show an important solvatochromic effect leading to large Stokes shifts. Linear solvation energy relationships were employed to correlate the position of fluorescence spectra maxima with microscopic empirical solvent parameters. This study indicates that important intramolecular charge transfer takes place during the excitation process. In addition, an analysis of the solvatochromic behavior of the UV–Vis absorption and fluorescence spectra in terms of the Lippert–Mataga equation shows a large increase in the excited‐state dipole moment, which is also compatible with the formation of an intramolecular charge‐transfer excited state. We propose both naphthoxazole derivatives as suitable fluorescent probes to determine physicochemical microproperties in several systems and as dyes in dye lasers; consequence of their high fluorescence quantum yields in most solvents, their large molar absorption coefficients, with fluorescence lifetimes in the range 1–3 ns as well as their high photostability.     

GA-ACE: Alternating conditional expectations regression with selection of significant predictors by genetic algorithms

The non-linear regression technique known as alternating conditional expectations (ACE) method is only applicable when the number of objects available for calibration is considerably greater than the number of considered predictors. Alternating conditional expectations regression with selection of significant predictors by genetic algorithms (GA-ACE), the non-linear regression technique presented here, is based on the ACE algorithm but introducing several modifications to resolve the applicability limitations of the original ACE method, thus facilitating the practical implementation of a very interesting calibration tool. In order to overcome the lack of reliability displayed by the original ACE algorithm when working on data sets characterized by a too large number of variables and prior to the development of the non-linear regression model, GA-ACE applies genetic algorithms as a variable selection technique to select a reduced subset of significant predictors able to accurately model and predict a considered variable response. Furthermore, GA-ACE actually provides two alternative application approaches, since it allows either the performance of prior data compression computing a number of principal components to be subsequently subjected to GA-selection, or working directly on original variables.In this study, GA-ACE was applied to two real calibration problems, with a very low observation/variable ratio (NIR data), and the results were compared with those obtained by several linear regression techniques usually employed. When using the GA-ACE non-linear method, notably improved regression models were developed for the two response variables modeled, with root mean square errors of the residuals in external prediction (RMSEP) equal to 11.51 and 6.03% for moisture and lipid contents of roasted coffee samples, respectively. The improvement achieved by applying the new non-linear method introduced is even more remarkable taking into account the results obtained with the best performance linear method (IPW-PLS) applied to predict the studied responses (14.61 and 7.74% RMSEP, respectively).     

Spectroscopic Study of the E/Z Photoisomerization of a New Cyrhetrenyl Acylhydrazone: A Potential Photoswitch and Photosensitizer†

The new cyrhetrenyl acylhydrazone [(CO)₃Re(η⁵‐C₅H₄)‐C(O)‐NH‐N = C(CH₃)‐(2‐C₄H₂S‐5‐NO₂)] ( E‐CyAH ) has been designed, synthesized and fully characterized to study the effect of having a cyrhetrenyl fragment (sensitizer) covalently bonded to an acylhydrazone moiety (switch), on its photophysical and photochemical properties. The crystal structure reveals that E‐CyAH adopts an E‐configuration around the iminic moiety [‐N = C(CH₃)]. The absorption spectrum of E‐CyAH displays two bands at 270 and 380 nm, which are mainly ascribed to π → π* intraligand (IL) and d_π → π* metal‐to‐ligand charge transfer (MLCT) transitions, being consistent with DFT/TD‐DFT calculations. Upon 365 nm irradiation, E‐CyAH photoisomerizes to Z‐CyAH , as evidenced by UV‐Vis and ¹H‐NMR spectral changes, with a quantum yield value Φ_{E‐CyAH →Z‐CyAH} of 0.30. Z‐CyAH undergoes a first‐order thermal back‐isomerization process, with a relatively short half‐life τ_1/2 of 277 min. Consequently, E‐CyAH was quantitatively recovered after 24 h, making it a fully reversible T‐type molecular photoswitch. This remarkable behavior allows us to measure the individual photophysical properties for both isomers. In addition, E‐CyAH and Z‐CyAH efficiently photosensitize the generation of singlet oxygen (O₂ (¹Δ_g)) with good yield (Φ_Δ = 0.342).     

Industrial case study: Evaluation of a mixed-mode resin for selective capture of a human growth factor recombinantly expressed in E. coli

Mixed-mode chromatography resins are gaining popularity as effective purification tools for challenging feedstocks. This study presents the development of an industrial application to selectively capture recombinant human vascular endothelial growth factor (rhVEGF) on Capto MMC from an alkaline feedstock. Capto MMC resin contains a ligand that has the potential to participate in ionic, hydrophobic, and hydrogen boding interactions with proteins and is coupled to a highly cross-linked agarose bead matrix. VEGF is a key growth factor involved in angiogenesis and has therapeutic applications for wound healing. In this process, it is expressed in Escherichia coli as inclusion bodies. Solids are harvested from the cell lysate, and the rhVEGF is solubilized and refolded at pH 9.8 in the presence of urea and redox reagents. The unique mixed-mode characteristics of Capto MMC enabled capture of this basic protein with minimal load conditioning and delivered a concentrated pool for downstream processing with >95% yields while reducing host cell protein content to <1.2%. This study explores the impact of loading conditions and residence time on the dynamic binding capacity as well as the development of elution conditions for optimal purification performance. After evaluating various elution buffers, l-arginine HCl was shown to be an effective eluting agent for rhVEGF desorption from the Capto MMC mixed-mode resin since it successfully disrupted the multiple interactions between the resin and rhVEGF. The lab scale effort produced a robust chromatography step that was successfully implemented at commercial manufacturing scale.     

Pseudomonas aeruginosa UV-A-induced lethal effect: influence of salts, nutritional stress and pyocyanine.

The presence of NaCl in plating media shows an important protection against the Pseudomonas aeruginosa UV-A-induced lethal effect, contrasting with the known sensitizing action of salts on UV-A-irradiated Escherichia coli cells. MgSO4 exhibits a similar protection, but lower concentrations than for NaCl are needed to achieve the same effect. NaCl protection from lethal effects involves an osmotic mechanism, while MgSO4 could act by a different process. On the other hand, when cells grown in a complete medium are then incubated for 20 min in a synthetic medium and irradiated with UV-A, a very marked protection is obtained. This protection is dependent on protein synthesis, since treatment with tetracycline, during the nutritional stress, blocks its induction. These results offer a new example of cross-protection among different stressing agents. In our experimental conditions, natural phenazines of P. aeruginosa are not present in the cells, ruling out the possibility that these pigments act as photosensitizers. Conversely, pyocyanine (the major phenazine produced by this microorganism) prevents the UV-A killing effect in a concentration-dependent way when present in the irradiation media. Finally, UV-A irradiation induces, as in E. coli, the accumulation of guanosine tetraphosphate and guanosine pentaphosphate, although the physiological meaning of this finding has yet to be determined.