Effect of Ion and Binding Site on the Conformation of Chosen Glycosaminoglycans at the Albumin Surface

Albumin is one of the major components of synovial fluid. Due to its negative surface charge, it plays an essential role in many physiological processes, including the ability to form molecular complexes. In addition, glycosaminoglycans such as hyaluronic acid and chondroitin sulfate are crucial components of synovial fluid involved in the boundary lubrication regime. This study presents the influence of Na+, Mg2+ and Ca2+ ions on human serum albumin–hyaluronan/chondroitin-6-sulfate interactions examined using molecular docking followed by molecular dynamics simulations. We analyze chosen glycosaminoglycans binding by employing a conformational entropy approach. In addition, several protein–polymer complexes have been studied to check how the binding site and presence of ions influence affinity. The presence of divalent cations contributes to the decrease of conformational entropy near carboxyl and sulfate groups. This observation can indicate the higher affinity between glycosaminoglycans and albumin. Moreover, domains IIIA and IIIB of albumin have the highest affinity as those are two domains that show a positive net charge that allows for binding with negatively charged glycosaminoglycans. Finally, in discussion, we suggest some research path to find particular features that would carry information about the dynamics of the particular type of polymers or ions.     

Comparison of Volatile Profiles of Meads and Related Unifloral Honeys: Traceability Markers

Volatile profiles of unifloral honeys and meads prepared in different ways (boiled-saturated, not boiled-unsaturated) were investigated by headspace solid-phase micro extraction (HS-SPME) and dehydration homogeneous liquid–liquid extraction (DHLLE) followed by GC-FID/MS analyses. The obtained data were analyzed by principal component analysis (PCA) to evaluate the differences between the investigated products. The volatile profiles of honey as well as the boiled and the not boiled meads prepared from it showed significant discrepancies. The meads contained more aliphatic acids and esters but fewer monoterpenes and aliphatic hydrocarbons than the honey. Significant/substantial differences were found between the boiled (more aliphatic alcohols and acids) and the not boiled meads (more aliphatic hydrocarbons and esters). Some compounds related to yeast metabolism, such as tryptophol, may be considered markers of honey fermentation. This research allowed us to identify chemical markers of botanical origin, retained and detectable in the meads: 4-isopropenylcyclohexa-1,3-diene-1-carboxylic acid and 4-(1-hydroxy-2-propanyl)cyclohexa-1,3-diene-1-carboxylic acid for linden; valeric acid, γ-valerolactone, p-hydroxybenzoic acid for buckwheat; 4-hydroxybenzeneacetic acid, homovanillic acid and trans-coniferyl alcohol for honeydew; and methyl syringate for canola.     

Poloidal–toroidal decomposition in a finite cylinder. I: Influence matrices for the magnetohydrodynamic equations

The Navier–Stokes equations and magnetohydrodynamics equations are written in terms of poloidal and toroidal potentials in a finite cylinder. This formulation insures that the velocity and magnetic fields are divergence-free by construction, but leads to systems of partial differential equations of higher order, whose boundary conditions are coupled. The influence matrix technique is used to transform these systems into decoupled parabolic and elliptic problems. The magnetic field in the induction equation is matched to that in an exterior vacuum by means of the Dirichlet-to-Neumann mapping, thus eliminating the need to discretize the exterior. The influence matrix is scaled in order to attain an acceptable condition number.     

The Rothe method for the Mckendrick-von Foerster equation

We present the Rothe method for the McKendrick-von Foerster equation with initial and boundary conditions. This method is well known as an abstract Euler scheme in extensive literature, e.g. K. Rektorys, The Method of Discretization in Time and Partial Differential Equations, Reidel, Dordrecht, 1982. Various Banach spaces are exploited, the most popular being the space of bounded and continuous functions. We prove the boundedness of approximate solutions and stability of the Rothe method in L ^∞ and L ¹ norms. Proofs of these results are based on comparison inequalities. Our theory is illustrated by numerical experiments. Our research is motivated by certain models of mathematical biology.     

Novel (R)-(+)-limonene-derived ligands: synthesis and application in asymmetric transfer hydrogenations

(R)-(+)-Limonene was transformed into mono-N-tosylated-1,2-diamine derivatives using an N-tosylaziridination procedure followed by sodium azide treatment and reduction on Pd/C. The ligands obtained proved effective in the asymmetric transfer hydrogenation protocol on aromatic ketones.     

Luminescent cellulose fibers activated by Eu3+-doped nanoparticles

UV- active cellulose fibers were obtained by dry-wet method spinning an 8?% by weight α-cellulose solution in N-methylomorpholine-N-oxide (NMMO) modified by europium-doped gadolinium oxyfluoride Gd₄O₃F₆:Eu³⁺ containing 5?mol (%) of the dopant. Photoluminescent nanoparticles were introduced in the in powder form into a polymer matrix during the process of cellulose dissolution in NMMO. The dependencies of emission intensity on excitation energy and the concentration of Gd₄O₃F₆:Eu³⁺ nanoparticles in the final cellulosic products were examined by photoluminescence spectroscopy (excitation and emission). The fiber structure was studied by X-ray powder diffraction analysis. The size and dispersity of the nanoparticles in the polymer matrix were evaluated using scanning electron microscopy and X-ray microanalysis. The influence of different concentration particles (in the range from 0.5 to 5?% by weight) on the mechanical properties of the fibers, such as tenacity and elongation at break, were determined.     

Global attractor for the Navier–Stokes equations with the heat convection in a cylindrical pipe

Global existence of regular solutions to the Navier–Stokes equations coupled with the heat convection in a cylindrical pipe has already been shown. In this paper, we prove the existence of the global attractor to the equations and convergence of their solutions to a stationary one. Copyright © 2012 John Wiley & Sons, Ltd.     

Non-singular space-times with a negative cosmological constant: V. Boson stars

We prove existence of large families of solutions of Einstein-complex scalar field equations with a negative cosmological constant, with a stationary or static metric and a time-periodic complex scalar field.