Organometallic reactions in aqueous media: indium-promoted additions to 2-pyridyl and glyoxylic acid oxime ethers

Oxime ethers derived from 2-pyridinecarboxaldehyde and glyoxylic acid can be effectively allylated in water with five differently functionalized allylic bromides promoted by indium. When the metal is positioned in close proximity of flanking heteroatomic centers, chelation by In is indeed operative and affects both reactivity and stereochemistry. Stereochemical assignments in the addition products were based on X-ray crystallographic measurements and spectral correlations.     

Spot overlapping in two-dimensional polyacrylamide gel electrophoresis maps: relevance to proteomics

Proteomics requires a large-scale, simultaneous separation of proteins from a mixture, assessment of the relative abundance of these molecules, and identification and characterization of each component. In 2-D PAGE separations, the best method of choice for protein analysis, separation of all the proteins present in the sample is still far to be achieved and comigrating proteins in the same spot are in general present. A statistical estimation of the degree of spot overlapping present in a 2-D PAGE separation is here described: for different conditions of spot overcrowding in the map, the degree of overlapping can be quantified in terms of purity degree of each spot or percentage of proteins that will appear in the map as a single spot. A computer simulation approach is described: it is based on the protein separation pattern present in the experimental maps. The results thus obtained are compared to a theoretical model (statistical degree of peak overlapping model) based on random spot position. The described procedures were applied to an experimental reference map of human plasma. The severity of spot overlapping in 2-D PAGE maps is estimated and the influence of different experimental conditions (strip dimension, detector system performance, pI range) is discussed. These informations are useful to quantitatively estimate the degree of error associated with identification and quantitation of each protein and to set-up experimental conditions which will increase resolution and greatly decrease the probability of spot overlapping.     

Comparative studies of quasi-relativistic density functional methods for the description of lanthanide and actinide complexes

We present a comparative Density Functional Theory (DFT) study based on two different implementations of relativistic effects within the Kohn-Sham (KS) approach, to describe the metal-ligand interaction in I(3)M-L complexes (L = NH(3), NCCH(3), CO and M = La, Nd, U). In the first model, the scalar corrections were included by a quasi-relativistic approach (QR) via the so-called ZORA or Pauli Hamiltonians, while in the second, these effects are taken into account in a quasi-Relativistic Effective Core Potential (RECP). These relativistic approaches were used in conjunction with various gradient corrected (GGA) or hybrid (SCH) functionals. The structural parameters obtained from geometry optimizations have been compared to experimental structural trends, and rationalized by a KS orbital analysis. Both approaches provide similar results for mainly ionic metal-ligand bonds (e.g., for the sigma-donor ligand L = NH(3)). For the pi-acceptor ligands (NCCH(3), CO), the QR approach is in agreement with experimental trends and consistent with the presence of a backbonding interaction between U(III) and the neutral ligand, which does not exist in the lanthanide homologues. The GGA/RECP methods also reproduce this phenomenon, while the SCH/RECP scheme fails to describe this interaction. The role of the RECP, of its size, and of additional polarization functions has also been examined. Finally, the failure of the SCH/RECP approach was interpreted as a consequence of a bad estimation of frontier orbital energy levels in the uranium and ligand species.     

Circular dichroism spectra and absolute configuration of some aryl methyl sulfoxides

The absorption and circular dichroism (CD) spectra of three aryl sulfoxides, i.e. (-)-(S)-1-naphthyl methyl sulfoxide, (S)-1, (-)-(S)-1-(2-methyl)naphthyl methyl sulfoxide, (S)-2 and (-)-(S)-9-phenanthryl methyl sulfoxide, (S)-3, have been interpreted by means of the coupled oscillator model formulated by DeVoe. Theoretical spectra have been calculated starting from input geometries provided by molecular mechanics (MMX) calculations and by employing standard spectroscopic parameters to describe the allowed transitions of the aromatic and the sulfoxide chromophores. The satisfactory agreement between the predicted and experimental spectra allows us to confirm the configurational assignment of these compounds as (-)/(S). The analysis of CD spectra, affording the right assignment of the absolute configuration (AC) of the alkyl aryl sulfoxides, then offers a practical alternative to the more complex vibrational circular dichroism spectroscopy and ab initio optical rotation calculation techniques that have been used very recently to assign the AC of (-)-2 and (-)-3.     

Synthesis and molecular modelling studies of resorcin[4]arene-capped porphyrins

Three new resorcin[4]arene-capped porphyrins (3, 5 and 7) different in the porphyrin skeleton, in the linking arms and in the cavity dimensions, have been synthesised. Molecular modelling calculations explored the conformations and the cavity size of the three compounds and showed that their hydrophobic pockets can accommodate one molecule of water or methane (3 and 5), or benzene (7) without any distortion. Notably, the capped porphyrin 5 was able to inhibit the oxidation of Co(II) to Co(III), whereas compound 7 did it only partially.     

Crystal structures and vibrational and solution and solid-state (CPMAS) NMR spectroscopic studies in triphenyl phosphine,arsine, and stibine silver(I) bromate systems, (R3E)xAgBrO3 (E = P,As, Sb; x = 1-4)

Adducts of triphenyl phosphine, triphenyl arsine, and triphenyl stibine with silver(I) bromate have been synthesized and characterized both in solution ((1)H and ESI MS spectroscopy) and in the solid state (IR, single-crystal X-ray structure analysis). The triphenyl phosphine complexes have been also investigated by (31)P[(1)H] solution and (31)P cross-polarization magic-angle-spinning (CPMAS) NMR spectroscopy. The topology of the structures in the solid state was found to depend on the nature of EPh(3) and on the stoichiometric ratio AgBrO(3)/EPh(3). In AgBrO(3)/PPh(3) (1:1)(4) (1) and AgBrO(3)/PPh(3) (1:2) (2), the bromate is in the unfamiliar and hitherto structurally uncharacterized role of coordinating ligand, the complex having a mononuclear form in 2 and a less familiar tetrameric form in 1. In AgBrO(3)/AsPh(3) (1:4).CH(3)OH (7) and AgBrO(3)/SbPh(3) (1:4).C(2)H(5)OH (11), the cations are the familiar homoleptic [Ag(EPh(3))(4)](+) array with the bromate role simply that of counterion. The AgBrO(3)/AsPh(3) (1:2)(2).0.7"H(2)O" derivative (6) is binuclear L(2)Ag(mu-BrO(3))(2)AgL(2) with a four-membered ring core (L = AsPh(3)).     

Determination of free L- and D-alanine in hydrolysed protein fertilisers by capillary electrophoresis

of racemisation of hydrolysed protein fertilisers (HPFs) using an The objective of this study was to determine the degree inexpensive and easy to handle analytical method for qualitative control of the products. Using a polyacrylamide coated capillary and a run buffer containing 0.1 M Tris-borate+2.5 mM EDTA-Na2+0.1% sodium dodecylsulfate+10 mM beta-cyclodextrin a quantitative separation of D- and L-alanine (Ala) was made from an not treated HPF sample derivatised with dansyl chlorine by capillary electrophoresis. The D-Ala:[D-Ala+L-Ala] ratio, called degree of racemisation (RD), was calculated. The analysis of ten commercial HPFs has shown that more than 60% of HPFs have an RD > or = 40%. while only one product has shown an RD <5%. These results showed that most of the HPFs on the market are obtained with strong hydrolytic processes and high contents of D-amino acids are probably less effective as plant nutrients or even potentially dangerous to plants.     

A new deuterated alkylating agent for quantitative proteomics

Weakly basic molecules containing a double bond, such as 2- and 4-vinylpyridine, are able to react and selectively alkylate -SH groups in proteins, thus preventing their re-oxidation to disulphide bridges. In contrast to conventional alkylating agents such as iodoacetamide and non-charged acrylamide derivatives, such molecules achieve 100% alkylation of all -SH residues, even in complex proteins, without reacting with other functional groups. Their use is particularly effective in proteome analysis and more generally for analyzing proteins in which the -SH groups should be blocked. Additionally, the use of vinylpyridines, partially or totally deuterated and thus with a mass difference compared with their non-deuterated counterparts of 4-7 Da, allows studies of induction/repression of protein synthesis (quantitative proteomics).     

In situ UV-visible assessment of extent of reduction during oxidation reactions on oxide catalysts

The extent of reduction of active centers during oxidative alkane dehydrogenation on VOx/Al2O3 was measured from pre-edge UV-visible spectral features and found to increase with increasing VOx domain size and propane/O2 ratio.