Rotation about the C?N bond in 2-aza-1,3-butadiene and the N?N bond in 2,3-diaza-1,3 butadiene: A molecular orbital study

The geometry and energy of 2-aza-1,3-butadiene and 2,3-diaza-1,3-butadiene have been calculated using the 6-31G* basis set as a function of the CNCC and CNNC dihedral angles, respectively. With the 2-aza derivative potential minima are located at 0° (trans) and at about 130° for a gauche structure approximately 9.5 kJ mol^?1 less stable than the trans. Potential maxima are at about 75° giving a gauche barrier height of approximately 19 kJ mol^?1 relative to the trans structure, and at 180° (cis) giving a barrier height of approximately 14.5 kJ mol^?1 relative to the 130° gauche structure. With the 2,3-diaza derivative the gauche barrier has disappeared and there are a series of gauche structures in the region 70°–100° of almost equal energy 12.5-15 kJ mol^?1 less stable than the trans. In addition the cis barrier is much greater, nearly 70 kJ mol^?1 relative to the trans structure. Inclusion of electron correlation, accounting for about 50% of the correlation energy, produces no significant changes in the shape of the potential energy curves. There are systematic and progressive changes in almost all the geometrical parameters as the ?CH? groups in butadiene are replaced by ?N? . The outward tilt and compression within the methylene groups show adverse steric interactions to be operative in the cis structures. The values of V_nn indicate that gauche structures of both the 2-aza and the 2,3-diaza derivatives near the cis structure are more compact (as with butadiene), and gauche structures of the 2-aza derivative near the trans structure are less compact (as with butadiene). Originating in the changes in bond lengths and bond angles, rotation-independent nuclear–nuclear interactions again play an important role.     

Intramolecular interaction effects and the structure of N2OS and N2O2: An Ab initio study

An ab initio study of O?N? N?S with full geometry optimization has been carried out to corroborate the presence of an interaction between the terminal atoms in this type of structure, which, in O?N? N?O, apparently stabilizes the cis conformer. Using the unscaled 4–31G basis set with a full set of d functions on the sulfur, there is a potential minimun at the trans but not the cis geometry. A gauche conformer with a torsional angle of 77.2° is the most stable. With N₂O₂ this basis set gives potential minima at both the cis and trans geometries, but the trans conformer is slightly more stable, contrary to experiment and the results of (7,3) basis-set calculations reported in the literature in which Gaussian lobe functions were employed. Using a (9,5) basis set there is no longer a potential minimum at the cis geometry, and a gauche structure is more stable than the cis conformer as in the case of N₂OS with the less-extended basis set. Force constants (harmonic and anharmonic), compliance constants, relaxed force constants, and interaction-displacement coordinates for both molecules are compared for key structural elements.     

Closed tube sample introduction for gas chromatography-ion mobility spectrometry analysis of water contaminated with a chemical warfare agent surrogate compound

Ion mobility spectrometry (IMS) is a proven technology for detection of vapor phase chemical warfare agents. The technology is suitable for field portable instrumentation due to its small size, high sensitivity, speed of analysis, and low power consumption. However, it suffers from a limited dynamic range and potential difficulties in identifying compounds in complex matrices. The use of gas chromatography (GC) coupled to IMS can overcome the difficulty of chemical identification in mixtures by separating the sample into individual components before detection. Using this approach, IMS technology has previously been adapted to detect biological aerosols using an open tube pyrolyzer and a short GC column (Py-GC-IMS). The open sample introduction tube of a Py-GC-IMS instrument would be a convenient configuration to accept aerosol particulates, and while viewed as needed for aerosol trapping, is not optimal for liquid chemical analyses. To examine the usefulness of an existing Py-GC-IMS system for analysis of chemicals in water, an existing open-port sample interface was replaced with a septum-equipped closed tube injector to contain analyte vapors resulting from liquid injection. Tributylphosphate (TBP) was used as a surrogate chemical warfare agent, and aqueous injections into both closed and open tube assemblies were performed. Sample introduction into the closed tube inlet was also accomplished using solid phase microextraction (SPME) preconcentration. The limit of detection for TBP using an open tube, closed tube, and closed tube configuration with SPME sample introduction was 0.980, 0.196, and 0.0098 mg/L, respectively.     

Processes associated with ionic current rectification at a 2D-titanate nanosheet deposit on a microhole poly(ethylene terephthalate) substrate

Films of titanate nanosheets (approx. 1.8-nm layer thickness and 200-nm size) having a lamellar structure can form electrolyte-filled semi-permeable channels containing tetrabutylammonium cations. By evaporation of a colloidal solution, persistent deposits are readily formed with approx. 10-μm thickness on a 6-μm-thick poly(ethylene-terephthalate) (PET) substrate with a 20-μm diameter microhole. When immersed in aqueous solution, the titanate nanosheets exhibit a p.z.c. of − 37 mV, consistent with the formation of a cation conducting (semi-permeable) deposit. With a sufficiently low ionic strength in the aqueous electrolyte, ionic current rectification is observed (cationic diode behaviour). Currents can be dissected into (i) electrolyte cation transport, (ii) electrolyte anion transport and (iii) water heterolysis causing additional proton transport. For all types of electrolyte cations, a water heterolysis mechanism is observed. For Ca²⁺ and Mg²⁺ions, water heterolysis causes ion current blocking, presumably due to localised hydroxide-induced precipitation processes. Aqueous NBu₄⁺ is shown to ‘invert’ the diode effect (from cationic to anionic diode). Potential for applications in desalination and/or ion sensing are discussed.

     

The use of 90°-1,3-butadiene as a reference structure for the evaluation of stabilization energies for benzene and other conjugated cyclic hydrocarbons

Reactions are described that employ 90°-1,3-butadiene as a reference structure for the evaluation of the stabilization energyof the benzenoid and other cyclic conjugated hydrocarbons. The unique benefits of this rotamer of butadiene as a reference molecule within the homodesmotic conceptual framework are discussed. Experimental stabilization energies are presented for a number of cyclic hydrocarbons.     

A designed synthetic analogue of 4-OT is specific for a non-natural substrate

The substrate specificity of 4-oxalocrotonate tautomerase (4-OT) is characterized by electrostatic interactions between positively charged arginine (Arg) side chains on the enzyme and the dianionic substrate, 4-oxalocrotonate. To generate specific hydrogen-bonding interactions with a monoanionic substrate analogue, we have introduced a urea functional group into the active site by replacing arginine side chains with isosteric citrulline (Cit) residues. This design was based on the complementarity between the urea functionality of citrulline and the uncharged amide function of the substrate, as opposed to the guanidinium-carboxylate electrostatic interaction between the wild-type enzyme and the natural substrate. Indeed, the synthetic (Arg39Cit)4-OT analogue catalyzed the tautomerization of the non-natural monoamide-monoacid substrate while it was a poor catalyst for the natural diacid substrate. The specificity of (Arg39Cit)4-OT for the monoamide-monoacid substrate relative to that of the diacid substrate was found to be 740-fold greater than that of the wild-type enzyme for tautomerization of the non-natural substrate as compared with the natural one. The role of electrostatic interactions in the tautomerization of the monoamide-monoacid substrate was probed in detail with several other Arg to Cit analogues of this enzyme. This study has demonstrated that chemical manipulation of the functional groups within the active site of an enzyme can modify its catalytic activity and substrate specificity in a predictable way, suggesting that the incorporation of noncoded amino acids into proteins has great promise for the development of new enzymatic mechanisms and new binding interactions.     

Modelling,optimisation and control of selectivity in the separation of aromatic bases by electrokinetic chromatography using a neutral cyclodextrin as a pseudostationary phase

A simple mathematical model describing the separation of a series of aromatic bases by electrokinetic chromatography using beta-cyclodextrin (beta-CD) as a pseudostationary phase is described. The model takes into account changes in electrolyte pH and the different formation constants between the neutral and charged forms of the analytes with the CD. Constants in the model were obtained within the two-dimensional experimental space defined by pH and [beta-CD] with nonlinear regression using only five experimental points. These constants agreed with expected trends in analyte-CD interactions and predicted much higher formation constants for the neutral analyte-CD complex than for the charged analyte-CD complex. Correlation between predicted and observed mobilities using additional 20 points within the experimental space gave r(2) = 0.995. Optimisation of the pH and [beta-CD] was performed using both the normalised resolution product and minimum resolution product criteria and provided two optimum separations which exhibited different selectivities. Differences between predicted and observed migration times at these optima were less than 2.5 and 5% for the normalised resolution product and the minimum resolution criteria, respectively. In both cases the correct migration order was predicted. The model was also applied successfully to the optimisation of conditions for the separation of a specific mixture of analytes or for conditions under which particular analytes migrated in a desired order.     

Novel approach to the zaragozic acids. Enantioselective total synthesis of 6,7-dideoxysqualestatin H5

The total synthesis of 6,7-dideoxysqualestatin H5 (3) has been completed by a concise approach that features the stereoselective intramolecular vinylogous aldol reaction of the furoic ester 25a to give 30 or its trimethylsilyl ether derivative 34, which possess the requisite absolute stereochemistry at C(3)-C(5) of 3. Compound 34 was reduced to the saturated bislactone 39, and the C(1) side chain subunit 47 was introduced leading to a mixture of the hemiacetals 48 and the corresponding ketone 49. When this mixture was stirred with methanolic acid, transketalization occurred to give a mixture of 50 and the spirocyclic methyl acetals 51a,b. Oxidation of the primary alcohol group in 50 followed by saponification of the two remaining ester groups gave 3. The longest linear sequence in the synthesis commences with commercially available erythronolactone (26) and requires 17 chemical steps with only 10 isolated intermediates.     

Synthesis,metal-exchange kinetics and X-ray structure of the nickel(II) complex of the diazacyclam ligand 1,3,6,10,12,15-hexa-azatricyclo [13.3.1.16,10]eicosane, [NiL] (ClO4)2

The preparation of the nickel(II) complex of the diazacyclam ligand 1,3,6,10,12,15-hexaazatricyclo [13.3.1.16,10]eicosane (2) by the reaction of the nickel(II) complex of N-(2-aminoethyl)-1,3-diaminopropane with formaldehyde in MeOH solution is described. The crystal structure of [NiL](ClO4)2 has been determined. The nickel atom is four coordinate and planar with Ni-N bond lengths of 1.969(4) and 1.928(3)Å in a centrosymmetric structure. The basic diazacyclam ring system has a trans III configuration with the two additional six-membered rings fused in a chair conformation.The kinetics of the metal exchange:for the nickel complexes (1) and (2) have been studied in detail. Under the experimental conditions employed, with copper(II) in at least a tenfold excess, the reaction is independent of the copper(II) concentration. The copper(II) effectively scavenges the free ligand as the nickel(II) complex dissociates. For the nickel complex (1) k = 2 × 10–4 s–1 at 60°C and H = 126 ± 5 kJmol–1 and S298 = 61 ± 15 JK–1mol–1. For the complex (2), k = 1.8 × 10–4 s–1 at 60°C and H = 99 ± 6 kJmol–1 and S298 = –21 ± 10 JK–1 mol–1.